Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00270 ATGGCACAGGGAAAGATGGTGATGACTCTGCTTGCCGTTATCGTTGCCGTTCACTGGGCAGGAGCAGCGGCACAGTCGGACTGTACGAATGTGCTGATCAGCTTGTCACCGTGCCTGAATTACATTACAGGGAACTCTTCTACCCCATCACAAGGATGCTGCACACAGCTTGCAACCGTTGTCCGCTCACAACCACAGTGCTTGTGCCAGGTCCTGAATGGTGGTGGTTCCTCGCTTGGGGTCAACATCAACCAAACCCAGGCTCTGGCTCTGCCCCAGGCTTGCAATGTTCAGACTCCTTCCATCAGCAGCTGCAATGTTGCTTCTCCCACCGGCTCTCCAGCAGGATCACCGGAATCTTCAAACAATGTTCCTTCAGGAACTGGATCTAAGACTGTTCCATCACCAGACAACAACTCATCAGACGGAAGCTCCATCCATTTGTCAAAACCTCTACTATTCTCCATCTTGTTGGCTTCTACATATGCTTCAGCTTTCAAGTTGTACTGA 510 50.98 MAQGKMVMTLLAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQGCCTQLATVVRSQPQCLCQVLNGGGSSLGVNINQTQALALPQACNVQTPSISSCNVASPTGSPAGSPESSNNVPSGTGSKTVPSPDNNSSDGSSIHLSKPLLFSILLASTYASAFKLY 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1738335 1740153 - Cp4.1LG08g04100.1 Cpe08g00270 473236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00270 169 Pfam Probable lipid transfer 15 105 IPR016140 -
Cpe08g00270 169 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 107 IPR036312 -
Cpe08g00270 169 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 163 - -
Cpe08g00270 169 Gene3D - 25 109 IPR036312 -
Cpe08g00270 169 SMART aai_6 28 105 IPR016140 -
Cpe08g00270 169 MobiDBLite consensus disorder prediction 107 144 - -
Cpe08g00270 169 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Cpe08g00270 169 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Cpe08g00270 169 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Cpe08g00270 169 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 163 IPR043325 -
Cpe08g00270 169 CDD AAI_LTSS 35 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00270 - - - csv:101204822 293.508
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01446 Cpe08g00270 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00388 Cpe-Chr4:4513764 Cpe08g00270 Cpe-Chr8:1738335 7.02E-18 dispersed
Cpe05g00527 Cpe-Chr5:3135461 Cpe08g00270 Cpe-Chr8:1738335 2.07E-11 dispersed
Cpe08g00270 Cpe-Chr8:1738335 Cpe18g00119 Cpe-Chr18:2782042 5.46E-21 dispersed
Cpe20g00159 Cpe-Chr20:898949 Cpe08g00270 Cpe-Chr8:1738335 1.43E-06 dispersed
Cpe03g00670 Cpe-Chr3:4016596 Cpe08g00270 Cpe-Chr8:1738335 1.96E-10 transposed
Cpe14g00870 Cpe-Chr14:7167258 Cpe08g00270 Cpe-Chr8:1738335 1.65E-06 transposed
Cpe12g00190 Cpe-Chr12:1209270 Cpe08g00270 Cpe-Chr8:1738335 1.03E-09 wgd
Cpe03g01446 Cpe-Chr3:11556911 Cpe08g00270 Cpe-Chr8:1738335 2.83E-107 wgd
Cpe05g00025 Cpe-Chr5:100671 Cpe08g00270 Cpe-Chr8:1738335 9.22E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g528 . . . . . Bpe14g01197 . . . . . Cma14g01723 . Car14g01554 . Cpe08g00270 Cpe03g01446 . . . . . . . Cla06g00595 Cam06g0634 Cec06g0637 Cco06g0640 Clacu06g0620 Cmu06g0613 Cre06g1381 Cone14ag0860 Cone15ag0858 . . Lsi05g01618 . . . . . . . . . . . . Cmo06g01400 Cmo14g01762 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00270 Cpe_Chr08 FPKM 12.48418 12.979721 31.384764 31.200994 12.830228 11.798499 12.431353 25.330978 25.413435 26.404758