Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00276 ATGGCGACGTTGTTGCATTCGGAATCTCGGCGCTTGTATTCTTGGTGGTGGGATAGCCATATCAGCCCCAAAAACTCAAAATGGCTACAGGAGAATCTTACAGGTTATGCATCTTCCATCTTGACTAACCTTACTGATGCGAATATGGATGCCAAAGTAAAAGCAATGATCAAACTCATTGAAGAAGATGCAGACTCCTTTGCAAGGAGAGCAGAAATGTACTACAAGAAACGTCCCGAGCTAATGAAATTAGTCGAGGAATTTTACCGAGCTTACCGTGCTTTAGCCGAAAGATATGACCATGCAACTGCAGAGCTTCGTCATGCACATAAAACCATGGCTCAAGCTTTTGACAACCAAATGCCTCCTTTTATGTTCTCTGATGAGTCAGCTTCAGGGTCTTCTAGTTCTGAAGCTGAAGTCCACACACCAGAAATCCACCTCCCGAATCGTGCACTGCTCGATCGAGATGACTCGCACAAGGATTCGGCATGTTCATCATCAACAAACCAACATCCATTAATAACAAAAGGAGACAATGAGCTAGAAAATTTAGAGGTTAGTGAAGGAGGAAGCATCAAACCACAACTAGTTTTTTCTGAAGGGGAATTGGATGACCATAGTTTGCAAAACGTATCCTCTCAGTTATCAAGTAAAGCTTATGATCTCGAATCGCATGAGCTGGTTGAGTCGGGAAGTGACGAGAAATTGGACGTCGAACTTCAAAACTTAAGAAAGAGACTCAATCAGATGGAAGCTGAAAAGGAAGCTTTCTTTCTTAAATACCAGAATTCTTTGGAAAAGTTATCTAGCTTAGAGAAAGAACTTAGTTCTGCTCAGAAAGATGCCGGTCGACTAGACGAACGAGCGAGCAAAGCCGAAATCGAAATAAAAATATTGAAGGAAGCCCTTATAGATCTGAAAGCAGAGAAGAATGCTGGTCTTCTACAATATAATCAATGTTTGCAAAAGATATCTAGCCTAGAAAAGCTATTATTTGTAGCCCAACAAGATGCTGAAGCACATAATGAGAGAGTTGCCAAGGCAGAAATTGAGGCGCAGAACTTTGAGCAACAGCTTTCCAGATTAGCAGCTGAAAAGGAGGCCAGTCTTCTTCAGTATGAGCAATGCCTAAAGAAGATATCCGCTTTGGAGAAGAAAATCTCTCTTTCTGAAGATTATGCAAGAATGCTTGATGAACAAATGAGTAGCTCAGAGACTGAAGTCAAAGAACTTAAGAGAGCTCTTAATGAACTAAATGAAGAGAAGGAAATAGCATCCCGCCAGTATGAGCAGTGCTTGGAGAAGATTGCGAAAATGGAAGCTGTAATATCTTGTGCTCAAGATGACGCAAAACGTCTGAAAGGTGAGCTTATGATGGCTAAAGAAAAACTCGAGACAACCGAAGAAAGGTGTGCTCGTTTGGAGCAATCAAACCATTCACTGCAGTTTGATGCAGACAAACTTGTGCAGAAGATTGCTATTAAGGATCAAGAGCTTGCAGAAAAGCTAGATGAGTTGAAGAAAGTTCAGAGTCTAATGAACGACGAGCAGTCGCGATTCGTACAAGTTGAAAACACTCTCCACACTCTGCAGAATTTGCATTGTCAATCTCAGGAGGAGCAGAGAGCTCTGACTTTGGAGCTAAAAAATGGTCTCATGATGTTGAAGGATTTGGATATATGCAAACATGGTATGGAGGAAGAGCTTCAACGAGTTAAGGACGAAAACAAAATGCTGAATGAACTACATTTTTCTTCTGACACTTCGATGAAGAATTTAGAGGACCAATTATCTAGCTTGAAGGAGATGAAGGACAAACTTGAAGAAGTTGTTGCACAAAAAGAAGATCAGAGCAACTTGCTTGAGAAAGAGATCCTTCATTTGAGAGAAGAAATTAAGGGCTTAAGCGGAAGATACCACGGCATAACGAGACAATTGGAGGCAGTAGGATTGGATCCCGACTCGCTCGAATCGTCAGTGAAGGAATTTCAGGAGGAGAATGCCAAGCTGAGGGGGACATGTGAAAAGGACAGGAACAAGATGGAAGCACTTCATGAGAAGCTCAGTTATATGGATGAACTTTCAAAGGAAAATTCCATTCTCAAGGTATCTCTAGCTGAGCTGAATGCTGAATTGGAGAAAGTCAAGGAATCCCAGGAAGAAAAAACTGCTATTGTTGCAGAGAAATCTTCGTTGCTTTCACAGTTGCAGAATGTAACTGAGAATATGATGAAACTTTTAGAGAAGAACACATTGCTAGAAGACTCCCTATCCGGTGCAAACAAAGAGCTTGAAGGTTTAAGAGCAAAATCAAAGGGCTTAGAAGAATTCTGCCAGTTATTGAAGGATGAGAGGTCAAATCTTCTGAATGAACGAGGGGTGTTGGTGGGTCGACTCGAAAACATCGAACCAAAACTAGGAAATCTCGAAAAGAGGTTTACAAATCTTGAAGAAAAGTATTCTGATCTTGAAAATGACAAAGACTCTGCCTTATATCAAATAGAAGAATTGAGATTTTCCCTTCTCATGGAAGAACAAGAGCATACAACTTACAAACAATTGACCGAGGTGAGACTTGCCGGTTTGGAGGACGATGTCCATGCCCTGCGAGAAGAAAGTAGAGTAGGCAAGGAAGAAATCGAAGAACTACTAGATAATGCTGTAAACGCCCAGGTCGAGATCTATATCTTGCAGAGGTTTGTTGAGGATATGGAAAAGAAAAATATTTCTTTGCTCATTGAATGTGGACAATATGAAGAGGCATCCAAGTTATCAGATAAACTTATTGCTGATTTGGAAGGCGAAAATCTCGAGCAACAAGTCGAAGTAGAGTTTATGTACAATGAAATCGATAAACTAAGAGCTGGAATCCGAAAGGTATTAATGGCTCTTCGAATTGATCAAGATTATGTGCAGGGAAATATGAAAGAAGAGAGAATCCTGATAGTGGATATCTTGACCAGAATTGAGGACTTGAAAGCTTCTGTGTTCAAAAACAAGGACAAGAAGCAGCAACTGCTAGTTCAGAACTCAGTTTTATTAACTCTTCTCAAGCAACTGAGTTTAGAGAGCGAAGAACTTCTATTAGAGAAAGATAACATTATGCAGGAGTTAAAGATAATGAAGGGGCAGCTAGCAATGCATGAAAACGACAAGCACGAGCTTCTGAAGTCGAAAAACGAGTTGATGAAGCAAGTTAGCCAGTGGGAGCAACATGAGCTACTGCTGAAAGCCGAGATCGAAACTCTAAATGAGAAGCTAGTAAATCTTCAAGGGACCTGCCTTATGCTGGAAAAGGAAAATCATAATGTTGCTGAAGAAAAGAAATCTTTGCTCAAGAAATTTTTGGACCTTGAAGAAGACAAGAACATTATTCAACAAGAACAGCACGATTCAATCGTCCGGGAAGTGATTGCGTTCAATATCTTATCGTCCGTTTTTGAAAGCTTCAAAACCGAGAAATTCATGGAAACGGAGAAGCTCGTTCAAGATATTTGTCGTCTCCAAGTGGTGAATTCTGATACAAAGGAAGAAGTTGGAAAGTTAGCAGAGAAATTTCAGTTGAAGGAAGTGGAAAACTTGCATTTAAATGGTTCATTAGAGAAATTGGCTAAGGAGCTACATGAAGCTAAGGACATGAACGATCAACTTAGCCATCAAATTTTACTTGGAAGTGATTTTCTGAGGGTGACAGCCCAAGAGCTTTCTGAAACAGAAGAGAAGCTTAAAAATTCACATCTTGAACTGTCTGAAAAGTGCTTAAACCAGGAGAATGAGATTCAAAGCCTTTGTGAACTGAACGGAAACTTAAAATACGAAGTCGATTTATTGCACGACGAGATCGAGAGATGCAAAGTTAAAGAGGAATGTCTGAATTCAGAATTACAGGAGAGAAGAGATGAATTTGAGCTCTGGGAAGCGGAGGCCACGACGTTTTACTTCGATCTTCAAATCTCATTGATCCGGGAGGTCTTATACGAACATACGGTTCATGAACTTGCACAGGCTTGTGAAACTGCTGGGGATGAGAATGCTGCAAAAACTACAGAGATTGAACAACTCAGAGAAAGAGTAGGTTCCCTGGAAACTGAAATTGGAGAGATGGAAGCACAGATGTCTGCTTATAAGCCTGCCATAGCTTCTCTGAGACATGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAAACTAGGGATATCTGTAAGGGTTTTGTAGGAGAAGAGGAGGAGGAAACCAAGATTCATGTTCATCACAGTAGCTGTTATGTCCACAAAGAAGAGATATTGGATTTGCAGAAGATTGGGGCCGTGATAAAGGCAGTCGAGATGGCTGTGATCGAAGAAAAGGAAAAACTGAACAAAGAAGCTGCTGAAAAACGTGTCAAAAACTCGAAATCGGAAGGAAACTCGGTTCAAAAAGCAACGAGTAAGGAAGGGAAAGGTTTGAGGGATGGAATTAGTGATAAAGTAAAGGCAAGAAAGAATAAACCTGAGAATGGAATATTGATGAAAGATATTCCATTGGATCATGTATCAGATAGTTCATTCCAGAGAAGAAGCAAAAGGAGGGAATGTAGTGAGACCAGTGATCAAATGCTGAAGTTGTGGGAAACTGAAGAACAAGAATGCGAGCAGAGTTTGATTGATAGCGTGCCACAAAGCCCGTCGGACGGGCAAATCGAGTGCCCACAGTCAGAAATTGTAGAACATAAAAGTCCAGATTGTTCTTCAGAGCTGCAAGTAGAGAAGGAGTTGAGCGTTGATAGATTGGAGCTATCGCCTAGCATTAGAGAACGAATTCGACGAGGTCGAAAAGGAAAGGTTTTGGAGAGACTTGATTCAGATGTTGTTCAGTTGACAGGTCTTCTAACAAGCGTTCAGGATTTGAAAAAGAGAATGGAAGTGAACACAGTGGAAATGGCTAGAAACAATGAATACGACACGGTCGAGAAACATTTAAAAGAAGTCGAGGAAGCGATCTTCCAGCAAGTAAATATAAATGGTCAACTGAAGCAGAGTTTGGAACGCAGTCCATCCTCTTTCGAGCGAAGGCCATCGTTAGAAAGCGAGGCAACTGGAAACATGCCCCTAAACAAACTAACAGAGCAGGCACAAAGAGGATCAGAGAAGATAGGAAAACTACAGTTTGAAGTACAGAACATTCAGCGCGTTATTATGAAACTCGAATCCGAGAAAACAAGAAAAGGGAAGAACAGATTCTCGAAGAGTAAACCGGGTGTTATTCTGAGAGATTTCATCTACAGAAGCGGAAAACGCAGCAGCGAAAGACGGAAGAAGGCGTGTGCTTGTGGATGTACAAAACCTTCTACTCATGGAGACTGA 5346 40.98 MATLLHSESRRLYSWWWDSHISPKNSKWLQENLTGYASSILTNLTDANMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATAELRHAHKTMAQAFDNQMPPFMFSDESASGSSSSEAEVHTPEIHLPNRALLDRDDSHKDSACSSSTNQHPLITKGDNELENLEVSEGGSIKPQLVFSEGELDDHSLQNVSSQLSSKAYDLESHELVESGSDEKLDVELQNLRKRLNQMEAEKEAFFLKYQNSLEKLSSLEKELSSAQKDAGRLDERASKAEIEIKILKEALIDLKAEKNAGLLQYNQCLQKISSLEKLLFVAQQDAEAHNERVAKAEIEAQNFEQQLSRLAAEKEASLLQYEQCLKKISALEKKISLSEDYARMLDEQMSSSETEVKELKRALNELNEEKEIASRQYEQCLEKIAKMEAVISCAQDDAKRLKGELMMAKEKLETTEERCARLEQSNHSLQFDADKLVQKIAIKDQELAEKLDELKKVQSLMNDEQSRFVQVENTLHTLQNLHCQSQEEQRALTLELKNGLMMLKDLDICKHGMEEELQRVKDENKMLNELHFSSDTSMKNLEDQLSSLKEMKDKLEEVVAQKEDQSNLLEKEILHLREEIKGLSGRYHGITRQLEAVGLDPDSLESSVKEFQEENAKLRGTCEKDRNKMEALHEKLSYMDELSKENSILKVSLAELNAELEKVKESQEEKTAIVAEKSSLLSQLQNVTENMMKLLEKNTLLEDSLSGANKELEGLRAKSKGLEEFCQLLKDERSNLLNERGVLVGRLENIEPKLGNLEKRFTNLEEKYSDLENDKDSALYQIEELRFSLLMEEQEHTTYKQLTEVRLAGLEDDVHALREESRVGKEEIEELLDNAVNAQVEIYILQRFVEDMEKKNISLLIECGQYEEASKLSDKLIADLEGENLEQQVEVEFMYNEIDKLRAGIRKVLMALRIDQDYVQGNMKEERILIVDILTRIEDLKASVFKNKDKKQQLLVQNSVLLTLLKQLSLESEELLLEKDNIMQELKIMKGQLAMHENDKHELLKSKNELMKQVSQWEQHELLLKAEIETLNEKLVNLQGTCLMLEKENHNVAEEKKSLLKKFLDLEEDKNIIQQEQHDSIVREVIAFNILSSVFESFKTEKFMETEKLVQDICRLQVVNSDTKEEVGKLAEKFQLKEVENLHLNGSLEKLAKELHEAKDMNDQLSHQILLGSDFLRVTAQELSETEEKLKNSHLELSEKCLNQENEIQSLCELNGNLKYEVDLLHDEIERCKVKEECLNSELQERRDEFELWEAEATTFYFDLQISLIREVLYEHTVHELAQACETAGDENAAKTTEIEQLRERVGSLETEIGEMEAQMSAYKPAIASLRHDVESLKHIVLPQTRDICKGFVGEEEEETKIHVHHSSCYVHKEEILDLQKIGAVIKAVEMAVIEEKEKLNKEAAEKRVKNSKSEGNSVQKATSKEGKGLRDGISDKVKARKNKPENGILMKDIPLDHVSDSSFQRRSKRRECSETSDQMLKLWETEEQECEQSLIDSVPQSPSDGQIECPQSEIVEHKSPDCSSELQVEKELSVDRLELSPSIRERIRRGRKGKVLERLDSDVVQLTGLLTSVQDLKKRMEVNTVEMARNNEYDTVEKHLKEVEEAIFQQVNINGQLKQSLERSPSSFERRPSLESEATGNMPLNKLTEQAQRGSEKIGKLQFEVQNIQRVIMKLESEKTRKGKNRFSKSKPGVILRDFIYRSGKRSSERRKKACACGCTKPSTHGD 1781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1782715 1789713 + Cp4.1LG08g04140.1 Cpe08g00276 473242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00276 1781 MobiDBLite consensus disorder prediction 125 144 - -
Cpe08g00276 1781 Coils Coil 500 520 - -
Cpe08g00276 1781 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 1247 - -
Cpe08g00276 1781 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1247 1781 - -
Cpe08g00276 1781 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 106 IPR011684 GO:0003779
Cpe08g00276 1781 Coils Coil 332 373 - -
Cpe08g00276 1781 SUPERFAMILY Myosin rod fragments 380 492 - -
Cpe08g00276 1781 Coils Coil 1109 1129 - -
Cpe08g00276 1781 MobiDBLite consensus disorder prediction 1478 1499 - -
Cpe08g00276 1781 MobiDBLite consensus disorder prediction 1673 1695 - -
Cpe08g00276 1781 Coils Coil 800 834 - -
Cpe08g00276 1781 MobiDBLite consensus disorder prediction 1454 1499 - -
Cpe08g00276 1781 Coils Coil 1448 1470 - -
Cpe08g00276 1781 Coils Coil 661 681 - -
Cpe08g00276 1781 Coils Coil 1338 1372 - -
Cpe08g00276 1781 Coils Coil 234 310 - -
Cpe08g00276 1781 Coils Coil 591 632 - -
Cpe08g00276 1781 Coils Coil 853 887 - -
Cpe08g00276 1781 Coils Coil 395 485 - -
Cpe08g00276 1781 PANTHER PROTEIN NETWORKED 4A 1 1247 - -
Cpe08g00276 1781 PANTHER PROTEIN NETWORKED 4A 1247 1781 - -
Cpe08g00276 1781 Coils Coil 730 771 - -
Cpe08g00276 1781 Coils Coil 1201 1221 - -
Cpe08g00276 1781 Coils Coil 1233 1253 - -
Cpe08g00276 1781 Coils Coil 556 583 - -
Cpe08g00276 1781 Coils Coil 1712 1732 - -
Cpe08g00276 1781 Pfam KIP1-like protein 14 100 IPR011684 GO:0003779
Cpe08g00276 1781 Coils Coil 1018 1066 - -
Cpe08g00276 1781 Coils Coil 1081 1101 - -
Cpe08g00276 1781 Coils Coil 692 726 - -
Cpe08g00276 1781 MobiDBLite consensus disorder prediction 125 141 - -
Cpe08g00276 1781 MobiDBLite consensus disorder prediction 156 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00276 - - - csv:101218746 2691.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01456 Cpe08g00276 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01116 Cpe-Chr2:10205710 Cpe08g00276 Cpe-Chr8:1782715 1.17E-11 dispersed
Cpe08g00276 Cpe-Chr8:1782715 Cpe01g00783 Cpe-Chr1:4584747 7.87E-36 dispersed
Cpe12g01043 Cpe-Chr12:8676141 Cpe08g00276 Cpe-Chr8:1782715 8.01E-76 wgd
Cpe15g00022 Cpe-Chr15:156198 Cpe08g00276 Cpe-Chr8:1782715 2.74E-40 wgd
Cpe17g00868 Cpe-Chr17:6726598 Cpe08g00276 Cpe-Chr8:1782715 2.85E-73 wgd
Cpe03g01456 Cpe-Chr3:11610725 Cpe08g00276 Cpe-Chr8:1782715 0 wgd
Cpe05g00028 Cpe-Chr5:121729 Cpe08g00276 Cpe-Chr8:1782715 3.07E-50 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00276 Cpe_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0