Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00278 ATGAAAACCTCAAACTCCCTACTCCTCCTCCTCCTCTCTATTTTCATCCTCCTCCCCAAACCTTCCCTTCAAGCATCTCCGCCGCCATCTCCGTCGCCATCGCCGCCATCCCCATTTCTCCCCAACCAGAGACTCCTCAAGGCCTACACAGCTCTCCAAGGTTGGAAACACGCCATCACCGACGACCCGACCAACTTCACTGCCGACTGGTACGGTCCCAACGTCTGCAACTACTCCGGCGTCTTCTGTGCCCCTGCTCCCGACGACCCCGACATCCTCACCGTTGCCGGGGTTGACCTCAACCACGCCAACATCTCGGGAACCCTGCCCGACGATCTCGGCCTCCTGACCGACCTTGCCCTGTTCCACATCAATTCCAATCGCTTCTGCGGCACCGTCCCCAACTCCTTCCGTTTCCTCACTCTCCTCTTTGAGCTCGATCTCAGCAACAATGACTTCTCCGGCGAGTTCCCCTCTGTAATTCTCTCTCTCCCTTCCCTCCAATTCCTCGACATTCGATTCAACAAATTCCACGGCGATCTCCCTTCTTCCCTGTTTGAAAAGAAACTCGATGCTCTGTTCATCAATAACAACGATTTCAAATTCTCCCTCCCGGAAAACATCGGCAATTCCCCTGTTTCTGTGCTGGTTTTTGCTAATAACAACATTAATGGCTGCCTCCCCTCGAGTTTGTCAAATATGAACAATACACTCGAAGAAATTATAATCACAAATAGTGGGTTGATTGGGTGTTTGCCGCCGGAAATTGGGTCGCTGAGAAATCTCACCGTTTTCGATGTCAGTGACAACAATCTCGTTGGACCTTTGCCGGAGACATTGGCTGGAATGAAGAAATTGGAGCAGCTAAATATCGCACATAACCAATTATCCGGCGAGATACCGGCGAGTGTCTGCTTGTTGCCGACATTGCAGAACTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGTCGATGTGCCTGAAGCTTCAGGCGAGTGATGACCGAAAAAATTGTTTGCCGGAAAGACCACTACAACGTTCGCCGGAGGAATGTAAAGCTCTGTACTCTTACCCTGTTGATTGCGGCGTCTTTGGCTGCACTCGACGGCTGCCACCTCCACCGCCGCCGCCGCTTTAA 1140 51.84 MKTSNSLLLLLLSIFILLPKPSLQASPPPSPSPSPPSPFLPNQRLLKAYTALQGWKHAITDDPTNFTADWYGPNVCNYSGVFCAPAPDDPDILTVAGVDLNHANISGTLPDDLGLLTDLALFHINSNRFCGTVPNSFRFLTLLFELDLSNNDFSGEFPSVILSLPSLQFLDIRFNKFHGDLPSSLFEKKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLEEIIITNSGLIGCLPPEIGSLRNLTVFDVSDNNLVGPLPETLAGMKKLEQLNIAHNQLSGEIPASVCLLPTLQNFTYSYNFFCSEPSMCLKLQASDDRKNCLPERPLQRSPEECKALYSYPVDCGVFGCTRRLPPPPPPPL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1792592 1793731 - Cp4.1LG08g04000.1 Cpe08g00278 473244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00278 379 Pfam Leucine rich repeat N-terminal domain 50 83 IPR013210 -
Cpe08g00278 379 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 31 376 - -
Cpe08g00278 379 SUPERFAMILY L domain-like 48 329 - -
Cpe08g00278 379 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 31 376 - -
Cpe08g00278 379 Gene3D Ribonuclease Inhibitor 211 334 IPR032675 -
Cpe08g00278 379 Pfam Leucine rich repeat 237 296 IPR001611 GO:0005515
Cpe08g00278 379 Gene3D Ribonuclease Inhibitor 47 210 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01458 Cpe08g00278 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00813 Cpe-Chr4:7646840 Cpe08g00278 Cpe-Chr8:1792592 4.20E-132 dispersed
Cpe08g00278 Cpe-Chr8:1792592 Cpe11g01106 Cpe-Chr11:9219685 2.97E-150 dispersed
Cpe03g01458 Cpe-Chr3:11620680 Cpe08g00278 Cpe-Chr8:1792592 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00278 - - cmos:111457817 624.78