Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00279 CAAACCCAATCCTCCCACCATCCCTTCAAGTTACGAGCCATGGGTAACGCAGATTTTGAGTGCCCTCACCGAGTCGCCATTCCACCAACCAAGCCATTCTTGGAGTCCTTAAGCTCCAACCTCAAAGAAACCTTCTTCCCCGATGACCCTTTCAAGCAGTTCAAAAACCAGCCTTTAGGACCCCAAATTCTCCTCTGGCTTAAGTACTTCATCCCCATATTCGAATGGGCTCCTCATTACACCCTCGACTTCTTCAAATCCGACCTCGTGTCCGGTGTCACCATCGCCAGTTTAGCCGTCCCTCAAGGCATCAGCTATGCCAATTCGAGCTTTATTCCTCCGTTGATATACGCCATGCTTGGTAGTTCGAAAGACGTGGCAGTCGGGACGGTAGCGGTAGCGTCGTTGCTCATGGCTGCCATAATGGGGAAGGAAGTCAGCCCCGTCGAACATCCGAAACAATACGTTCAGTTGGTTTTCACTGCCACGTTCTTCGCCGGAGTTTTCCAAGCTTCTCTCGGTTTTCTCAGGCTGGGGCTTATTGTTGACTTTTTGTCGCATGCAACAATAGTGGGGTTCATGGGTGGCGCGGCAACCGTGGTTTGTCTTCAGCAGCTAAAAGGAATATTAGGATTGGTTCATTTCACGCACGAGACCGATATTGTATCCGTTATAACCTCTGTTTCCTCACAAGTTCATCAGTGGAGATGGGAAAGTATTGTGTTGGGCTGCTGTTTTCTCTTCTTTCTCCTCCTCACCCGATACCTTAGCAAGAAGAAACCGATCTTCTTTTGGATAAATGCATTGGCGCCTTTGACGTCGGTCATCTTGGGGAGTCTTCTCGTCTATTTAACCCACGCTGAAAAGCATGGAGTTCAAGTGATTGGGCATTTGAAGAAAGGGTTGAATCCACTATCTGCGACTGATTTAGCATTTGGATCTCCTCATCTCTTAATTGCCATCAAAACAGGGATCATCGTTGGAATCATTGGCCTTGCTAATTATCACACTGATGGCAACAAGGAGATGATAGCATTTGGGATCATGAACATTGTTGGTTCCTGCACTTCTTGCTACCTGACTTCCGGGCCATTTTCAAGGAGTGCTGTGAACTTCAATGCAGGATGTAAAACTGCAGTCTCCAATATTGTCATGTCAATAGCTGTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCATTACACACCCCTGGTGGTGCTCGCCTCCATAATCATCACTGCTATGATTGGCCTAATCAACTATGAAGAAGTCATCCACCTTTGGAAACTTGACAAATTCGACTTTGTCGTCTGCCTCGGTGCATACATCGGTGTCGTCTTTGGCAGTGTTGAAATGGGCTTGATCATTGCGGTTGCACTTTCTGTGTTGAGGGTGCTTCTCATGATCGCAAGGCCAAGAACTTTAGTATTAGGCAACATTCCCAACTCCACAATTTACAGAAGCATTGATCAATACCCAACAGCTGAGCATGTGCCTGGAATTCTCATCCTTCAATTGGAAGCACCAATCTATTTTGCGAACTCAAACTACCTGAGAGAAAGGCTTTCAAGGTGGATTACAGATGAAGAAGAGAGGATAAAATCATCAGGAGAAACCAGCTTGCAGTACATAATTCTGGACCTTTCCGGCGTGAGTAGCATTGATTCAAGTGGGATCAGCATGCTTAAAGAGATTAAGAAGAGTATTGAAAGAAAGGGGTTCAAACTTGTTCTTGCAAATCCGAAAAGTGAGGTGATAAAAAAGCTAAACAAGTCGAACTTCATCGAGGCGATCGGGCACGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACGGCCTGCAACTTCGTACTCCAAACATGGAAGCCAAGTCCTGTTGCTGCTGCTGAATTAGATTCAGCTGTGAACAGTGTGTAA 1920 45.99 QTQSSHHPFKLRAMGNADFECPHRVAIPPTKPFLESLSSNLKETFFPDDPFKQFKNQPLGPQILLWLKYFIPIFEWAPHYTLDFFKSDLVSGVTIASLAVPQGISYANSSFIPPLIYAMLGSSKDVAVGTVAVASLLMAAIMGKEVSPVEHPKQYVQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGILGLVHFTHETDIVSVITSVSSQVHQWRWESIVLGCCFLFFLLLTRYLSKKKPIFFWINALAPLTSVILGSLLVYLTHAEKHGVQVIGHLKKGLNPLSATDLAFGSPHLLIAIKTGIIVGIIGLANYHTDGNKEMIAFGIMNIVGSCTSCYLTSGPFSRSAVNFNAGCKTAVSNIVMSIAVMITLLFLTPFFHYTPLVVLASIIITAMIGLINYEEVIHLWKLDKFDFVVCLGAYIGVVFGSVEMGLIIAVALSVLRVLLMIARPRTLVLGNIPNSTIYRSIDQYPTAEHVPGILILQLEAPIYFANSNYLRERLSRWITDEEERIKSSGETSLQYIILDLSGVSSIDSSGISMLKEIKKSIERKGFKLVLANPKSEVIKKLNKSNFIEAIGHEWIYLTVGEAVTACNFVLQTWKPSPVAAAELDSAVNSV 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1795968 1800022 - Cp4.1LG08g03880.1 Cpe08g00279 473245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00279 639 SUPERFAMILY SpoIIaa-like 494 615 IPR036513 -
Cpe08g00279 639 TIGRFAM sulP: sulfate permease 72 611 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cpe08g00279 639 CDD STAS_SulP_like_sulfate_transporter 493 608 - -
Cpe08g00279 639 Gene3D STAS domain 472 617 IPR036513 -
Cpe08g00279 639 PANTHER BNAA04G05880D PROTEIN 16 634 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cpe08g00279 639 Pfam Sulfate permease family 85 440 IPR011547 GO:0016021
Cpe08g00279 639 ProSiteProfiles STAS domain profile. 492 615 IPR002645 -
Cpe08g00279 639 PANTHER SULFATE TRANSPORTER 16 634 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cpe08g00279 639 Pfam STAS domain 493 611 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00279 Cpe-Chr8:1795968 Cpe12g00701 Cpe-Chr12:6618880 0 dispersed
Cpe12g01044 Cpe-Chr12:8684374 Cpe08g00279 Cpe-Chr8:1795968 3.06E-50 wgd
Cpe17g00870 Cpe-Chr17:6736358 Cpe08g00279 Cpe-Chr8:1795968 0 wgd
Cpe03g01459 Cpe-Chr3:11624141 Cpe08g00279 Cpe-Chr8:1795968 2.34E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00279 K17471 - csv:101203205 1046.19