Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00290 ATGCAGCTTCTTAACTCCGAAGAAACGGTCGCCGACTCGTCGGAAAGCGGCCTTGGGGAGGAAAGAAATTTGAAATCTTCTAACTTGGTTTCGTTTGAGGGTGATAGTGGAAACGAAACCGATGATTCGGTTATTGATGTATCGGGGAGAAACTTGGATTCTCACTTCTTGGAGGGTTCCCACAGCTCAGTGAAGGGTCTGTACATATTTCGGAATGCGTTCAATTTGATTCCGAAATCAGTTGGCAACTTTGGAGAATTGAGAATGCTGAAGTTCTTCGGGAACGAGATTAATTTGTTTCCGCCGGAGTTGAAGAATTTTTCGGGGTTAGAATGCTTGCAGGTGAAGTTATCATCACCGGGTTTTGGTGGTTTATCATTACACGAACTGAAGGATCTGAAGGAGCTCGAGCTATCAAAGATTCCACCTAAACCTTCGTCGTTTCCAATTCTTAGTGAGATCGCTGGCCTTAAGTGCTTGACTAAGCTCACTGTTTGTCACTTTTCTATTAGATTCCTTCCTCCTGAAATTGGCTGCCTGGATAGTTTGGAGTATCTAGATCTCTCATTTAATAAGATGAAGAGCCTTCCAGCAGAAATAGGCTATTTGAATGCCTTGATATCCTTGAGAGTTGCCAATAACAAGTTGGTGGAACTACCTCCAGCTTTGTCCTCCCTGCAAAAGTTGGAGAATTTGGATCTCTCAAGTAATAGGTTAACGTCATTGGGATCTCTTGAACTTGTATCTATGCATAGCCTCAAGAACTTAAATTTACAGTACAATAAGTTTCTAAGAAGCTGTCAGATACCCTCCTGGATACGCTGCAACTTTGAAGGAAATTGTGGAGACAAAATAGCTGAAGAAGAATGTATTAGTTCTACAGTTGAAATGGATGTTTATGAAGCCACCATTCCAGACAATAGTGATAATTTTCCACATAAAGGTATTCGTAATCTCTCATCAAACCTATTAATGGGATCTTCAACAAACAGTAGATCATTTGCATCTCGAAAATCAGGTAAGCGATGGCGGAGACGACATTATTTACAGCAAAAAGCTCGCCAGGAGCGTTTGAATAATAGCAGGAAGTGGAAAGGAGTAGATCATCATACTGAAGTGAAGATCCATGAAAATCATGAACTTGGGCGGCTTGACACTGCTCCTACTTCTGAAACTACAGTTGAAGATTCATCAGTTATTGAGGAGTTATATGATAGTAAAGAGACCAGTCATGGAAAAGATGAAGGGGAAGATCTTATCAAGAACCACGAGAAGGACAACTTTGATGTCAAAAAGGAACTACCTGTGGAGGATTGCTCAGGTATCTGTAGTGGTGCTGCAGGAAAAATGACAAGGGACGACAATGAATGTCGTGAGCCCAGTGAGACTTTGCCGCTACCAGGAAATGAAGCACATGACCTAGAAGGGTCATCGTCCCAAATATCAAAGGATAATGCTAAGTTGAAAAGATATTCTGAGAGGGAACTTGATAATCCTAAACCTTGCAAGTCAAGAAAGGCAGCTGAAGATAGCTCAAGTTTATCTTGCAAGTACAATAATATATCATTTTGCAGCGTTGAAGATTATGTACCGGATGGATTTTATGATGCAGGGCGTGATCGTCCCTTTATGTCATTAAGGAATTATGAGCAAAATTTTCATCTTGATTCTCGTGAAGTCATTCTTGTCAACAGGGAACATGATGAATTATTAGACTCTACAGTGATATCTGCCAAGTCATTGGTACTTCGTCTAAAGCAGATTAACCGAACCCAAGAAAGACATCAAGTTCTTGATGACATGCATATCATACAAGTACTTGCTCTATTTGTGTCTGATCATTTTGGAGGCAGTGATAGAAGTGCAATGGTTGAGAAAACACGGAAAGCTGTTTCTGGTTCCAAGTATCAGAAGCCTTTTGTCTGCACCTGCTCAACTGGAGATCGGAATAATCTTACTGCGTCCACTAAATTAACGGTGGATAATTATGAGGATATTCTTTTTACTGATATCTGTGAGAAATCTCTTCGTGCTATTAAAGCTAGTCGAAATTCCGTCATAGTTCCCCTTGGAGCTCTGAAATTTGGTGTGTGCAGGCATAGAGCGCTTCTTCTTAAGTATTTGTGTGACCGAATGGAGCCTCCAGTACCTTGTGAGCTTGTGAGAGGTTACTTGGATTTCTTGCCTCATGCCTGGAATGTGATCTTAGTGAAAAGAGGCAATGCTTTGGTTCGAATGGTTGTTGATGCATGTCGACCAAATGATATACGAGAAGAAGCAGATCCCGAGTATTTTTGTAGGTATATTCCTCTCAGTCGTGCAGAACTTCCTATTTCTTTCGGAATGTCACCCAGTCCAGGATTTTCCTTCCCGTCTCTGTCCAACTGTGATGAGATTGAGAAGGCACCTTCTAGTTCTGTGATAAAGTGCAAACTTGGGTCAGTTGAGGCTGCTGCAAAGTTACGGATGCTTGAAGTTTGTGAATCTTCATTTGATGAGATAAGGAACTTTGAATACAGTTGCTTAGGTGAAGTTAGAATACTGGGTGCTTTGAAACACTCCTGCATAGTACAGATGTATGGGCATCAGTTATCTTCTGAATGGATTCCTTCTGAGGATGGAAAACCGAAGCGCCGGTTACTTAGATCTGCAATTTTTTTAGAGCACGTTAAAGGGGGATCTTTAAAGAGCTACTTGGACAAGTCGTTCCAAGCTGGGAAAAAGCACATTCCAATGGATCTGGCATTGCATGTAGCTCGAGATGTTGCAAGTGCTTTGGTAGAGCTGCATTCAAAACACATCATTCATCGTGACATCAAAAGTGAAAATGTTTTGATAGATTTTGATGAAAATTTGGATGGAGTTCCCATGGTTAAGCTTTGTGATTTTGATAGAGCAGTGCCCCTTCGATCTTCCTTGCACACTTGTTGCATTGCACATACTGGAATACCTCCTCCTGATGTTTGTGTTGGAACACCTCGATGGATGGCTCCAGAAGTTCTACGAGCAATGCATACACCAAATGTTTATGGACTGGAAGTGGATATTTGGTCATTTGGATGTCTGTTATTTGAACTGTTGACTTTTCAAATTCCGTACTTGGGGCTGACAGAACTGCAGATTTTCGATCAACTTCAGATGGGCAAAAGGCCAGAATTGATAGGAGAGCTTGAGGAGGAGGCACTGGGGTTGATAAAGGAAAGCTCAATGTCTCAATCTGTTCAAGAATCAGATGGTTCAGAGAAGGACCAAGAAACCAAAACATTCTTGATCGACTTGTTTTGCAAGTGTACTCAAAAAAATCCGAACGACCGACCAACAGCGGAAGAACTACACAAAATTCTGCTTGAGCACACAGCCAAAGTGAAATCTTTAGAAAAACTAGCCACATGA 3393 41.35 MQLLNSEETVADSSESGLGEERNLKSSNLVSFEGDSGNETDDSVIDVSGRNLDSHFLEGSHSSVKGLYIFRNAFNLIPKSVGNFGELRMLKFFGNEINLFPPELKNFSGLECLQVKLSSPGFGGLSLHELKDLKELELSKIPPKPSSFPILSEIAGLKCLTKLTVCHFSIRFLPPEIGCLDSLEYLDLSFNKMKSLPAEIGYLNALISLRVANNKLVELPPALSSLQKLENLDLSSNRLTSLGSLELVSMHSLKNLNLQYNKFLRSCQIPSWIRCNFEGNCGDKIAEEECISSTVEMDVYEATIPDNSDNFPHKGIRNLSSNLLMGSSTNSRSFASRKSGKRWRRRHYLQQKARQERLNNSRKWKGVDHHTEVKIHENHELGRLDTAPTSETTVEDSSVIEELYDSKETSHGKDEGEDLIKNHEKDNFDVKKELPVEDCSGICSGAAGKMTRDDNECREPSETLPLPGNEAHDLEGSSSQISKDNAKLKRYSERELDNPKPCKSRKAAEDSSSLSCKYNNISFCSVEDYVPDGFYDAGRDRPFMSLRNYEQNFHLDSREVILVNREHDELLDSTVISAKSLVLRLKQINRTQERHQVLDDMHIIQVLALFVSDHFGGSDRSAMVEKTRKAVSGSKYQKPFVCTCSTGDRNNLTASTKLTVDNYEDILFTDICEKSLRAIKASRNSVIVPLGALKFGVCRHRALLLKYLCDRMEPPVPCELVRGYLDFLPHAWNVILVKRGNALVRMVVDACRPNDIREEADPEYFCRYIPLSRAELPISFGMSPSPGFSFPSLSNCDEIEKAPSSSVIKCKLGSVEAAAKLRMLEVCESSFDEIRNFEYSCLGEVRILGALKHSCIVQMYGHQLSSEWIPSEDGKPKRRLLRSAIFLEHVKGGSLKSYLDKSFQAGKKHIPMDLALHVARDVASALVELHSKHIIHRDIKSENVLIDFDENLDGVPMVKLCDFDRAVPLRSSLHTCCIAHTGIPPPDVCVGTPRWMAPEVLRAMHTPNVYGLEVDIWSFGCLLFELLTFQIPYLGLTELQIFDQLQMGKRPELIGELEEEALGLIKESSMSQSVQESDGSEKDQETKTFLIDLFCKCTQKNPNDRPTAEELHKILLEHTAKVKSLEKLAT 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1850656 1858551 + Cp4.1LG08g03910.1 Cpe08g00290 473256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00290 1130 ProSiteProfiles Protein kinase domain profile. 793 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00290 1130 PANTHER BNAC08G43810D PROTEIN 65 1120 - -
Cpe08g00290 1130 SMART serkin_6 793 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00290 1130 ProSiteProfiles Leucine-rich repeat profile. 182 203 IPR001611 GO:0005515
Cpe08g00290 1130 Gene3D Ribonuclease Inhibitor 16 290 IPR032675 -
Cpe08g00290 1130 Pfam Leucine rich repeat 206 263 IPR001611 GO:0005515
Cpe08g00290 1130 MobiDBLite consensus disorder prediction 20 44 - -
Cpe08g00290 1130 Coils Coil 1125 1130 - -
Cpe08g00290 1130 MobiDBLite consensus disorder prediction 322 345 - -
Cpe08g00290 1130 SMART LRR_typ_2 226 249 IPR003591 -
Cpe08g00290 1130 SMART LRR_typ_2 180 201 IPR003591 -
Cpe08g00290 1130 SMART LRR_typ_2 203 225 IPR003591 -
Cpe08g00290 1130 SMART LRR_bac_2 226 245 - -
Cpe08g00290 1130 SMART LRR_bac_2 180 199 - -
Cpe08g00290 1130 SMART LRR_bac_2 203 222 - -
Cpe08g00290 1130 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 65 1120 - -
Cpe08g00290 1130 MobiDBLite consensus disorder prediction 322 336 - -
Cpe08g00290 1130 Pfam Protein kinase domain 838 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00290 1130 SUPERFAMILY RNI-like 61 266 - -
Cpe08g00290 1130 Gene3D Transferase(Phosphotransferase) domain 1 791 1129 - -
Cpe08g00290 1130 SUPERFAMILY Protein kinase-like (PK-like) 791 1115 IPR011009 -
Cpe08g00290 1130 Pfam Ethylene-responsive protein kinase Le-CTR1 672 749 - -
Cpe08g00290 1130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Cpe08g00290 1130 MobiDBLite consensus disorder prediction 450 487 - -
Cpe08g00290 1130 PRINTS Leucine-rich repeat signature 183 196 - -
Cpe08g00290 1130 PRINTS Leucine-rich repeat signature 226 239 - -
Cpe08g00290 1130 MobiDBLite consensus disorder prediction 1 44 - -
Cpe08g00290 1130 ProSiteProfiles Leucine-rich repeat profile. 228 249 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00290 - - - csv:101218031 1901.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00290 Cpe-Chr8:1850656 Cpe07g00777 Cpe-Chr7:6873917 5.32E-22 dispersed
Cpe03g01471 Cpe-Chr3:11666939 Cpe08g00290 Cpe-Chr8:1850656 2.57E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62541 PF00069 Pkinase 6.00E-38 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00290 Cpe_Chr08 FPKM 2.447253 2.469872 3.317499 4.629551 16.009804 15.657388 15.858265 7.71384 6.515245 8.378445