Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00297 ATGTACACGTCAGCCGCCACGATGGATCAAATGATCTTTGCTGTCCATCACCTTCGCCGAAGCTCCCTTCAACTTGCCGACCAAATATTATCGCTGCCCCCAAAACTTGGAAATTTCATCTCTGAATCGCGATTAGGGTTTTCTCTTCTGCTTCTTGATCGGTTCTTTTGTAAAGCTATTGTACTTCGCGCTTCGATATCCGATTTCCCGCTTCGATTAATTCAGGTTCGGGCATTTAGGCGATTTTGGGATACGATGGGGGCTTTCATTTCGAGATTCTGGTTCATGTTATTTCCGGCAAAAGAATACAAAATCGTGGTCGTTGGGTTGGATAATGCCGGAAAGACGACGACTCTTTACAAATTGCACTTGGGAGAGGTTGTTACTACACATCCTACGGTTGGAAGCAATGTTGAAGAGCTCGTGTACAAGAATATCCGATTCGAGGTATGGGATCTCGGTGGTCAAGAGAGGCTTAGGACATCATGGGCAACATATTACCGTGGAACTCATGCTGTGATTGCGGTGATAGACAGCACAGATAGAGCAAGAATCAGCATTATGAAGGACGAGCTCTTCAGACTACTCGGTCACGATGATCTTCAGCAATCTGTGGTGCTGGTTTTTGCAAACAAACAGGATCTTAAGGATGCCATGACTCCGGTCGAAATCACCGATGCTCTTTCGCTTCACAGCATCAAGAATCACGACTGGCACATCCAAGCCTGCTCTGCCCTCACCGGAGATGGTCTATACGATGGTCTTGGGTGGATTGCTCAGCAAGTTACCGGTAAAACGCCGAGTTGA 807 46.84 MYTSAATMDQMIFAVHHLRRSSLQLADQILSLPPKLGNFISESRLGFSLLLLDRFFCKAIVLRASISDFPLRLIQVRAFRRFWDTMGAFISRFWFMLFPAKEYKIVVVGLDNAGKTTTLYKLHLGEVVTTHPTVGSNVEELVYKNIRFEVWDLGGQERLRTSWATYYRGTHAVIAVIDSTDRARISIMKDELFRLLGHDDLQQSVVLVFANKQDLKDAMTPVEITDALSLHSIKNHDWHIQACSALTGDGLYDGLGWIAQQVTGKTPS 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1897072 1899588 - Cp4.1LG08g03680.1 Cpe08g00297 473263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00297 268 PANTHER ADP RIBOSYLATION FACTOR-RELATED 86 268 IPR024156 GO:0005525
Cpe08g00297 268 SMART arf_sub_2 86 266 - -
Cpe08g00297 268 CDD Arl5_Arl8 88 261 - -
Cpe08g00297 268 TIGRFAM small_GTP: small GTP-binding protein domain 101 230 IPR005225 GO:0005525
Cpe08g00297 268 PRINTS GTP-binding SAR1 protein signature 104 127 IPR006689 GO:0003924|GO:0005525
Cpe08g00297 268 PRINTS GTP-binding SAR1 protein signature 132 156 IPR006689 GO:0003924|GO:0005525
Cpe08g00297 268 PRINTS GTP-binding SAR1 protein signature 159 184 IPR006689 GO:0003924|GO:0005525
Cpe08g00297 268 PRINTS GTP-binding SAR1 protein signature 204 225 IPR006689 GO:0003924|GO:0005525
Cpe08g00297 268 ProSiteProfiles small GTPase Arf family profile. 96 262 - -
Cpe08g00297 268 PANTHER ADP-RIBOSYLATION FACTOR C1 86 268 - -
Cpe08g00297 268 SMART rab_sub_5 103 265 - -
Cpe08g00297 268 SMART sar_sub_1 86 262 IPR006689 GO:0003924|GO:0005525
Cpe08g00297 268 Gene3D - 91 267 IPR027417 -
Cpe08g00297 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 264 IPR027417 -
Cpe08g00297 268 Pfam ADP-ribosylation factor family 99 261 IPR006689 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00297 K07950 ARL5B; ADP-ribosylation factor-like protein 5B - csv:101220253 365.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01478 Cpe08g00297 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00009 Cpe-Chr7:49466 Cpe08g00297 Cpe-Chr8:1897072 4.03E-10 dispersed
Cpe07g00844 Cpe-Chr7:7654784 Cpe08g00297 Cpe-Chr8:1897072 1.01E-55 dispersed
Cpe08g00297 Cpe-Chr8:1897072 Cpe11g00600 Cpe-Chr11:3592195 9.58E-56 dispersed
Cpe03g01478 Cpe-Chr3:11706917 Cpe08g00297 Cpe-Chr8:1897072 1.44E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g583 . Blo12g00348 Bda03g00857 . Bpe04g00810 Bpe14g01217 Bma04g00757 Bma05g01086 . . . Cma14g01762 Car06g01176 Car14g01588 Sed02g1358 Cpe08g00297 Cpe03g01478 Bhi01g00744 Tan10g0770 Cmetu06g0372 . Hepe05g1599 . Lcy11g1596 . . . . . . . . . . Cone4ag0280 Lsi05g01651 . . Cme06g00560 Blo02g00594 . . Bda13g00096 Bpe05g00876 . . . . Cmo06g01367 Cmo14g01802 . . . . . . . . . . . . . Cla05g00498 Cam05g0546 Cec05g0559 Cco05g0557 Clacu05g0543 Cmu05g0515 Cre05g0583 . Csa03g01277 Chy06g00529 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006516 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00297 Cpe_Chr08 FPKM 2.45 2.251415 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0