Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00302 ATGGTCTCTTACGTTATCCACCCACAGGACACTCTGTTTTCCATCGCTTCAAGGTTCGGAGTACCAACATCGGAAATCACCGCCGCGAACCGCCCCAATCCGAAAGCGTTCGACACAATCTTCATCCCGGTAAGTCGTCTCCCGAATTTGACGCAACCCATTATTCTTCCACCGCCGCCAGAGCAGCCGCCGGCTCCGGTGAGAGAGGGAAAAAACAGGGCAGTAACAGGGCTGGCGATTGGGATGGGGATTGCTGGGTTTTTACTGATTTTAATGGTGGGTTTGTGGGTGTGTGGAGTGGGAAAGCGGCGGAGAAGTGAGAGGGAAATGAAGGAGGGAATTGAGAGGCAGAAATTGCAGGAAGTGGGGATTTGGAAGGGAAAGGGGAAAGAAATGGAGATGGATTTAATGGCGGATGTGTCGGATTGTTTGGATAAATACAGAGTGTTCAAGATCGAGGAGCTGAATGAAGCAACAAATGGGTTTCATGAGAGGAGCTTGATTCAAGGATCGGTTTACAAAGGGAGTATCAATGGAGTTGAGTATGCTATCAAGAAGATGAAGTGGAACGCCTATGAACAGCTCAAGATCTTGCAGAAGGTGAACCATGGTAATCTAGTGAAGCTCGAAGATGGAGTCGTGTCGACAAAGATGGATATCTTTGCGTTTGGAGTTGTTTTGCTCGAGCTCGTCTCTGGTAAGGAGGCCATTGATGAGGAAGGAAGGGTTCTATGGATGCGAGCGAGTGGGTTTTCGGAAGGGAAAGAGAAGGAGAAGTTAGACAGATTGAAGAATTGGATTGATGAAGCTCTTTTCGAGCAATCGTGCCCGATGGAGAGCGTGATGGATGTAATGAATGTGGCTGTTAGTTGCCTGCAAAAGGACCCGACGAAGAGGCCGAGCATGGTCGAGGTGGTTTATGCACTGAGCAAGAGCGACGACGCCGTGTTCGACTTCTCCGATGATACTCTATCAGCACCTATCTTAACAGCTAGG 996 49.1 MVSYVIHPQDTLFSIASRFGVPTSEITAANRPNPKAFDTIFIPVSRLPNLTQPIILPPPPEQPPAPVREGKNRAVTGLAIGMGIAGFLLILMVGLWVCGVGKRRRSEREMKEGIERQKLQEVGIWKGKGKEMEMDLMADVSDCLDKYRVFKIEELNEATNGFHERSLIQGSVYKGSINGVEYAIKKMKWNAYEQLKILQKVNHGNLVKLEDGVVSTKMDIFAFGVVLLELVSGKEAIDEEGRVLWMRASGFSEGKEKEKLDRLKNWIDEALFEQSCPMESVMDVMNVAVSCLQKDPTKRPSMVEVVYALSKSDDAVFDFSDDTLSAPILTAR 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1925041 1927412 + Cp4.1LG08g03790.1 Cpe08g00302 473268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00302 332 ProSiteProfiles LysM domain profile. 2 48 IPR018392 -
Cpe08g00302 332 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 209 327 - -
Cpe08g00302 332 SUPERFAMILY LysM domain 2 35 IPR036779 -
Cpe08g00302 332 SUPERFAMILY Protein kinase-like (PK-like) 154 307 IPR011009 -
Cpe08g00302 332 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 210 - -
Cpe08g00302 332 Pfam Protein tyrosine and serine/threonine kinase 209 307 IPR001245 GO:0004672|GO:0006468
Cpe08g00302 332 Gene3D Phosphorylase Kinase; domain 1 125 212 - -
Cpe08g00302 332 Gene3D Transferase(Phosphotransferase) domain 1 213 320 - -
Cpe08g00302 332 Pfam LysM domain 4 33 IPR018392 -
Cpe08g00302 332 CDD LysM 2 31 IPR018392 -
Cpe08g00302 332 PANTHER - 1 210 - -
Cpe08g00302 332 PANTHER - 209 327 - -
Cpe08g00302 332 Gene3D LysM domain 1 43 IPR036779 -
Cpe08g00302 332 SMART LysM_2 3 43 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00302 - - - cmo:103483654 315.849
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00302 Cpe-Chr8:1925041 Cpe05g01132 Cpe-Chr5:7665379 2.01E-11 dispersed
Cpe08g00302 Cpe-Chr8:1925041 Cpe03g01094 Cpe-Chr3:9027335 4.27E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62542 PF07714 PK_Tyr_Ser-Thr 4.50E-06 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00302 Cpe_Chr08 FPKM 7.98422 8.29062 8.564583 7.54739 8.589474 10.763296 9.429318 17.188423 16.408161 16.598579