Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00310 ATGAAGCATGAAGATGGCGGCTTCGGGAAGGTCATTCCATCGTCGCACCATCTTAGCCCTTCCTTCGTCGAAGGCATCGCTGCTATCGGGAAAAGCCATTTCCGGCGGACTTCGAAGGCTGTAATCAACAATCACAAGTTGATTCCGCATCTACATATAACGGAGTCCGGCCGCGTTGGTTTCTTGGAGAGATTTTCGCATTATGTTGCGAGGCAGTTAGGGCTTTCAGATGCAGATGACTATCCTCAACTCTGCAAGCTAGCGAACAATTATTTGAGGAAGACGAATGGATGCGTGGAAGAAATTTATGCATATTTCGCGAGTGAATCCGAGGCGGAATCTCTGTATCTGAAGTTAATGGATGAGTTTGATCAATGCATCTCGAGTTATTTCGCATTCCATTGGAGCCAAGCTCCCTTGATGATCAGTCAGGTTTTGAGTGTCGACTCCGAGCGCATGAAGCTGAAAGATCTTGTGGTGGCAGCGACTAGGAAGGAGAGGTTCGATAGGGTGTGTAAGGATCTGAAAGTGACAAGGGTATTCTCTACTTTGGTGGAGGAAATGAAGAAGATAGGTTGTGCTCCATCTAAGGGCGAGTCGAAATTCTCCCACACGATACCGCCATCGTCTCGAAGAGATAGGAGGCCTGTGCTTCTTCTTATGGGTGGTGGCATGGGGGCTGGCAAGAGTACTGTCCTCAAAGACATTTGCAAAGAGCCCTTCTGGTTGGAAGCAGAAACAAATAGAGTGATGGTAGAGGCAGATGCCTTCAAAGAGACTGATGTTATCTACAAAGCCATCAGCTCAATGGGCTATCACGATGACATGCTTCAAACTGCCGAATTGGTACACCAGCCATCAACCGATGCTGCATCATCGTTGCTGGTCACAGCGTTAAACGAGGGACGGGATGTGATCTTGGATGGCACTCTGTCTTGGGAGCCATACGTTATGCAGACCATTGAAATGGCTCGAAACATTCACAAACGTCGATATCGAATGGGAGTTGGGTACAAGGTAGAGAATGGAAAAGTGACAGAGAATTACTGGGAGGCTATGAGTGAAGAAGAAGAGAAGGAATTGAGGAAGGCGCATGGAGAAATGCAAAATAGAATGGCGTATAGAATAGAGTTGGTTGGAGTTGTTTGTGATGCTCATCTAGCTGTTGTTAGAGGAATAAGGAGAGCCATAATGATGGGAAGGGCTGTGAGGGTGAATTCTCAGTTGCAATCCCACAAGAGATTTGCTAATGCTTTTCCAAAATACTCCAAAGTTGTTGATAGCGTCAGGCTCTATTCCACCAATTCCACTGGCAACCCACCTAAGTTGATCTATAGAAAAGATAGCAACAAGTCGTTTGAGATGGTTGACCCAGAGGCACATGCATGGTTGACAACGTTGAGTAATTTAAACATCGATGCAGAATCAGTTCATGAGCTTTACCCAAACTCGAGCCTATTTTCTGAACCTGGTTCCATTTTGAAAGAAATGACTCCAACCTCTTTAAGGCTCAGTTGTCAAAAAGAGCTTAGATATGTGATTAAAAAGCTAGAAAGTTCAAGAACAATCTCAAATGAATTTTTACGGTGA 1590 45.22 MKHEDGGFGKVIPSSHHLSPSFVEGIAAIGKSHFRRTSKAVINNHKLIPHLHITESGRVGFLERFSHYVARQLGLSDADDYPQLCKLANNYLRKTNGCVEEIYAYFASESEAESLYLKLMDEFDQCISSYFAFHWSQAPLMISQVLSVDSERMKLKDLVVAATRKERFDRVCKDLKVTRVFSTLVEEMKKIGCAPSKGESKFSHTIPPSSRRDRRPVLLLMGGGMGAGKSTVLKDICKEPFWLEAETNRVMVEADAFKETDVIYKAISSMGYHDDMLQTAELVHQPSTDAASSLLVTALNEGRDVILDGTLSWEPYVMQTIEMARNIHKRRYRMGVGYKVENGKVTENYWEAMSEEEEKELRKAHGEMQNRMAYRIELVGVVCDAHLAVVRGIRRAIMMGRAVRVNSQLQSHKRFANAFPKYSKVVDSVRLYSTNSTGNPPKLIYRKDSNKSFEMVDPEAHAWLTTLSNLNIDAESVHELYPNSSLFSEPGSILKEMTPTSLRLSCQKELRYVIKKLESSRTISNEFLR 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1975965 1978716 - Cp4.1LG08g03710.1 Cpe08g00310 473276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00310 529 Pfam Zeta toxin 212 340 IPR010488 GO:0005524|GO:0016301
Cpe08g00310 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 345 IPR027417 -
Cpe08g00310 529 Gene3D - 200 463 IPR027417 -
Cpe08g00310 529 PANTHER UNCHARACTERIZED 33 521 IPR044802 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00310 - - - csv:101217085 833.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00310 Cpe-Chr8:1975965 Cpe16g00290 Cpe-Chr16:4888333 0 dispersed
Cpe12g00153 Cpe-Chr12:982963 Cpe08g00310 Cpe-Chr8:1975965 2.86E-166 wgd
Cpe03g01489 Cpe-Chr3:11761861 Cpe08g00310 Cpe-Chr8:1975965 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g617 . . . . . . . . . . Cma06g01340 . Car06g01160 . . Cpe08g00310 . . . . . . . . Cla06g00639 Cam06g0683 Cec06g0686 Cco06g0692 Clacu06g0669 Cmu06g0661 Cre06g1429 . . . . Lsi05g01673 . . . . Blo07g00246 . . . . . . Sed09g0707 . . . . . . . . Bhi12g01657 Tan06g2444 Cmetu05g1440 Lac12g2207 Hepe03g0257 . Lcy13g0343 . . . . . . . Lsi09g01262 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000661 0 3 3 1 2 3 6 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 3 3 3 3 7 5 3 100
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00310 Cpe_Chr08 FPKM 0.197396 0.0 0.508803 0.516063 134.149475 136.082092 130.293167 0.0 0.415315 0.0