Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00313 ATGCTTCCTCTTCACCAATGCATCGCCCCCCTCCTACTTCACTTCATCTTCCTCGCACCTTTTTCGTTGGCCTTAGCTCAGAATCATGAGGACCCAAGCATCAGAACCATGGAGGCTTTCTCCGGCTATCCTCTTCACGAGCCTTCCTCCTCTTCTATCCCAAACCCCATTTCTTCTCTCCTCGTCGATGCGGATTCCTTGGTGAAACAGATTGAGGAGCTTTCTACTTTCTCGGATTCTCCTTCCCCATCGGTTACCAGGATTCTTTACTCTGAAAAGGATGTGTATGTCAAGAACTTGATGGGGCACTCTGGTCTCTTTGTTAGAGAGGATGCTGTCGGTAACATATTCGGCAGATGGGAGGGCTCTGAACCTTTGCTTCCTGCCGTTGCAACAGGCTCTCATGTTGATGCAATTCCATTCTCTGGCAAATACGATGGAGTTGTTGGTGTATTGGGTGCTTTAGAAGCCATCAATGTCTTGAAAAGGTCGGGGTTCAAACCAAGGAGGTCTCTAGAAATTATCTTCTTTACCTCTGAGGAACCTACACGCTTTGGAATCAGCTGCTTGGGTAGCCGCTTGATGGCAGGGAGTGATGCACTTGCTAAAGCTTTGGAGACAACTGTTGATGCTCAGAATATATCTTTTATTGAAGCTGCTAGCTCTGCTGGGTACTTGACTGATTCAGCTCAGATATCAACGGTGTTTCTGAAGAAAGGAAGTTACTCTGCTTTCCTGGAATTGCACATAGAGCAGGGGCCCATTCTGGAGGAAGAAGGTATATCTATAGGAGTAGTGACTGCCATTGCAGCTCCTGCTAGTATAAAGGTGGAGTTTGAAGGCACTGGAGGCCATGCCGGTGCTGTACTGATGCCATATAGAAATGACGCTGGACTGGCAGCAGCTGAGCTAGCACTAGCAGTTGAGAAGCATGTATTGAGCTCTGGATCGATCGATACTGTCGGTACCGTTGGTATTCTGGAGCTGCATCCTGGAGCAATCAACAGCATCCCAAGCAAATCACATCTGGAAATAGACACCAGAGACATTGATGAAGAACGCAGAAATACTGTCATTAACAAGATTCATGAATCTGCAACTGAAATAGCTCAAAGGCGACGGGTCAAACTATCAGAATTCAAAATTATAAACCAGGATCCACCAGCACATTCTGACAAATCAGTAATAGAGGCAATGGTTTCTTCAACAAAAGAGCTCAATCTCACACACAAGCTGATGATTAGCAGAGCATACCATGATTCACTGTTTATGGCCAGGATATCCCCAATGGGTATGATATTCATTCCTTGCTATAAAGGGTACAGCCACAAGCCTGAAGAATTCTCCTCTCCCCAGGATATATCAAATGGAGTCAAGGTATTGGCCCTTACCCTTGCCAAATTGTCCCTGCAGTGA 1416 46.12 MLPLHQCIAPLLLHFIFLAPFSLALAQNHEDPSIRTMEAFSGYPLHEPSSSSIPNPISSLLVDADSLVKQIEELSTFSDSPSPSVTRILYSEKDVYVKNLMGHSGLFVREDAVGNIFGRWEGSEPLLPAVATGSHVDAIPFSGKYDGVVGVLGALEAINVLKRSGFKPRRSLEIIFFTSEEPTRFGISCLGSRLMAGSDALAKALETTVDAQNISFIEAASSAGYLTDSAQISTVFLKKGSYSAFLELHIEQGPILEEEGISIGVVTAIAAPASIKVEFEGTGGHAGAVLMPYRNDAGLAAAELALAVEKHVLSSGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEERRNTVINKIHESATEIAQRRRVKLSEFKIINQDPPAHSDKSVIEAMVSSTKELNLTHKLMISRAYHDSLFMARISPMGMIFIPCYKGYSHKPEEFSSPQDISNGVKVLALTLAKLSLQ 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1989329 1992720 - Cp4.1LG08g03450.1 Cpe08g00313 473279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00313 471 CDD M20_bAS 67 466 - -
Cpe08g00313 471 Pfam Peptidase family M20/M25/M40 132 466 IPR002933 GO:0016787
Cpe08g00313 471 PANTHER ALLANTOATE DEIMINASE-RELATED 59 466 IPR010158 GO:0016813
Cpe08g00313 471 SUPERFAMILY Zn-dependent exopeptidases 61 468 - -
Cpe08g00313 471 PANTHER ALLANTOATE DEIMINASE-RELATED 59 466 - -
Cpe08g00313 471 SUPERFAMILY Bacterial exopeptidase dimerisation domain 274 382 IPR036264 -
Cpe08g00313 471 Gene3D Zn peptidases 74 461 - -
Cpe08g00313 471 Gene3D - 271 387 - -
Cpe08g00313 471 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 67 467 IPR010158 GO:0016813
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00313 K18151 UAH; ureidoglycolate amidohydrolase [EC:3.5.1.116] - csv:101216373 801.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00313 Cpe-Chr8:1989329 Cpe20g00275 Cpe-Chr20:1544339 2.96E-34 dispersed
Cpe08g00313 Cpe-Chr8:1989329 Cpe09g00933 Cpe-Chr9:8390455 4.52E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g622 . . . . . Bpe14g01231 . . . . . . Car06g01157 . . Cpe08g00313 . . . . . . . . . . . . . . . . Cone15ag0143 . . Lsi05g01678 . . Cme06g00537 Blo02g00611 . . Bda13g00085 . . Bma02g00804 . . Cmo06g01351 . . . . . . . . . . . . . . Cla05g00480 Cam05g0522 Cec05g0535 Cco05g0536 Clacu05g0522 Cmu05g0494 Cre05g0560 . Csa03g01255 Chy06g00509 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011290 1 0 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00313 Cpe_Chr08 FPKM 15.940392 15.720688 27.512419 28.346939 12.113083 11.40233 12.310912 64.801796 60.655457 71.527649