Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g00320 | ATGGGTCTGGCGAATCCTTGGTGGACCACGCAGGTGGGGCTGCCGGGGCTCGATCATCATCACCCGGCGGCGGTCAACTCACCAATCTTCAAACAAAGCGATGAAAACAGCGGCGGAGGAAGCGGAAGCCGAGAGGACGACGATGATGACAACAACCGTGATGAGCCGAAAGAAGGTGCTGTGGAGACCGGAAACCGGAGACCAAGAGGGCGTCCACCTGGATCTAAAAACAAACCAAAACCACCCATCTTCGTCACACGTGACAGTCCCAACGCCCTTCGGAGCTACGTTCTAGAGGTGGCTGCCGGATCTGACGTGGCGGATTCAATCGCCCAATTCGCTCGGAAGCGCCAGCGTGGCGTCTGTGTCCTCAGTGCAACCGGCTTGGTCGCTAACGTCACGTTACGTCAGCCTACTTCTCCCGGTTCGGTAATGCCACTCCAAGGAAGGTTTGAGATTCTCTCTTTAACCGGCGCGTTTTTACCCGGTCCAGCCCCACCCGGATCCACCGGGCTGACCGTTTACTTGTCGGGCGGTCAGGGGCAGGTTGTCGGCGGGAGCGTTGTTGGGTCGCTTGTGGCGGCCGGTCCTATTATGGTAATTGCTGCTACTTTTTCTAATGCCACTTATGAAAGGTTGCCTCTTGAAGATCCGGAGGATCATGAAATTGGCAGTGGATCCGCCTCACACGGCGGCGCTACAAGCCCACCACAGGAAATTAGAGGCGGTGGGCAGATGCCAACTGGGATGCCGGATCCCACTTTGCCGTTGTATAATTTACTGCCCGACATGATGCCCAACGGCGTTCAGCTCGGCCACGACGGCTATGCTTACGTCCGACCGCCGTATTGA | 852 | 57.28 | MGLANPWWTTQVGLPGLDHHHPAAVNSPIFKQSDENSGGGSGSREDDDDDNNRDEPKEGAVETGNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPTSPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFSNATYERLPLEDPEDHEIGSGSASHGGATSPPQEIRGGGQMPTGMPDPTLPLYNLLPDMMPNGVQLGHDGYAYVRPPY | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 2023409 | 2024402 | - | Cp4.1LG08g03460.1 | Cpe08g00320 | 473286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g00320 | 283 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
| Cpe08g00320 | 283 | Gene3D | - | 93 | 223 | - | - | |
| Cpe08g00320 | 283 | ProSiteProfiles | PPC domain profile profile. | 90 | 231 | IPR005175 | - | |
| Cpe08g00320 | 283 | MobiDBLite | consensus disorder prediction | 217 | 257 | - | - | |
| Cpe08g00320 | 283 | PIRSF | ESCAROLA | 12 | 281 | IPR014476 | GO:0003680 | |
| Cpe08g00320 | 283 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 | 9 | 278 | - | - | |
| Cpe08g00320 | 283 | CDD | DUF296 | 94 | 176 | IPR005175 | - | |
| Cpe08g00320 | 283 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 94 | 207 | IPR005175 | - | |
| Cpe08g00320 | 283 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 91 | 218 | - | - | |
| Cpe08g00320 | 283 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 9 | 278 | IPR014476 | GO:0003680 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe07g00977 | Cpe-Chr7:8822495 | Cpe08g00320 | Cpe-Chr8:2023409 | 1.64E-97 | dispersed | |
| Cpe08g00320 | Cpe-Chr8:2023409 | Cpe12g00023 | Cpe-Chr12:113824 | 6.95E-66 | dispersed | |
| Cpe11g01009 | Cpe-Chr11:8519080 | Cpe08g00320 | Cpe-Chr8:2023409 | 3.69E-48 | wgd | |
| Cpe12g00151 | Cpe-Chr12:965802 | Cpe08g00320 | Cpe-Chr8:2023409 | 1.39E-67 | wgd | |
| Cpe03g01502 | Cpe-Chr3:11828854 | Cpe08g00320 | Cpe-Chr8:2023409 | 2.45E-165 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g00320 | - | - | cmos:111452940 | 504.982 |