Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00326 ATGGTTGCCGTCGGCAAAGTGAACCTCACGCCTGTCTCCAAACTTGACGATGCCTTCGACAGAGCATCCGAACTGAAAGCTTTCGATGATACTAAGGCCGGCGTCAAAGGCCTAGTCGACGCCGGGGTTGTCGAGATCCCAAGAATATTCTACCGCCCACCCAAAATGGACGATTCCAGTTCCGTCGAGACCCATCTCGGCGTTCCGGTGGTGGATCTCGAAGACGTCGACAAAGACCCCTTCAAACGCAGAGAGATTGTGGATAAAATCAGGGAAGCTTCAGAGACGTGGGGCTTTTTTCAAGCTGTAAACCATGGAGTTCCGGCGAGGCTTCAAGAGGAGGTCATCAATGGGGTGCGTCGATTTCACGAGCTAGACAGTGAAGTGAAGAAACAATATTATACAAGAGAGACCACGGCGCCGTTTGCTCTTGGTTTGAAATCGACCCATCTTCTTGACTTGGACTGCAACGAGGGACTAGCTCTTGTGTGCCACTATTATCCGCCATGTCCTCAGCCTGAACTCACCATTGGGGCCACCGAGCACTCCGACGATACCTTCATCACCATCCTGCTGCAAGACCATATCGGAGGTCTTCAAGTGCTTCAACACAACAAATGGGTGGATATTCCTCCTGTTCCGGGAGCCCTCGTCCACAGGGTGTTGGCGAATAGCGAGGGTCATCCGCGAGTATCAGTGGCAAGTTTCTTCTCCACCGGGCCTCTTCCGACCTCCAAACGTTATAGACCCATCGAAGAACTGTTGTCGGAAGAAAATCGTGCCAAGTACAGAGACATAACGGTTAGGGAATACAATCTCTACTATGCAGAAAAAGGGTTGGATGGGACCTCTGCTCTCCCACATTTCAGGCTT 873 51.55 MVAVGKVNLTPVSKLDDAFDRASELKAFDDTKAGVKGLVDAGVVEIPRIFYRPPKMDDSSSVETHLGVPVVDLEDVDKDPFKRREIVDKIREASETWGFFQAVNHGVPARLQEEVINGVRRFHELDSEVKKQYYTRETTAPFALGLKSTHLLDLDCNEGLALVCHYYPPCPQPELTIGATEHSDDTFITILLQDHIGGLQVLQHNKWVDIPPVPGALVHRVLANSEGHPRVSVASFFSTGPLPTSKRYRPIEELLSEENRAKYRDITVREYNLYYAEKGLDGTSALPHFRL 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2050349 2052181 - Cp4.1LG08g03500.1 Cpe08g00326 473292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00326 291 Gene3D - 143 274 IPR027443 -
Cpe08g00326 291 Gene3D - 25 142 IPR027443 -
Cpe08g00326 291 SUPERFAMILY Clavaminate synthase-like 32 281 - -
Cpe08g00326 291 Pfam non-haem dioxygenase in morphine synthesis N-terminal 68 137 IPR026992 -
Cpe08g00326 291 PANTHER CME8 PROTEIN 143 289 - -
Cpe08g00326 291 PANTHER CME8 PROTEIN 13 140 - -
Cpe08g00326 291 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 156 240 IPR005123 -
Cpe08g00326 291 Pfam 2OG-Fe(II) oxygenase superfamily 161 221 IPR044861 -
Cpe08g00326 291 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 143 289 - -
Cpe08g00326 291 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 13 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00326 - - - csv:101211800 386.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00326 Cpe-Chr8:2050349 Cpe17g00889 Cpe-Chr17:6908817 2.78E-60 dispersed
Cpe08g00325 Cpe-Chr8:2041892 Cpe08g00326 Cpe-Chr8:2050349 6.15E-33 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g654 . . . . . . . . . . . . . . . Cpe08g00326 . . . . . . . . Cla06g00651 Cam06g0697 Cec06g0700 Cco06g0709 Clacu06g0683 Cmu06g0674 Cre06g1443 . . . . . . . . . Blo07g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01229 . Cme05g00550
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00326 Cpe_Chr08 FPKM 0.0 0.0 0.0 1.26387 0.0 0.0 1.757575 1.075343 1.257395 2.592816