Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00333 ATGAGCGACGCGTTGAGGAGAGACTATCAAGTGAACGAAGAGATCGGCCGGGGAAGATTCGGCACTGTTTTTCGATGTATTTCCAGAGCTTTTGGTGGATTCTATGCTGTTAAATCCATGGACAAGAGGCGAATCTCCGCCGGTGATTCACTCGACTCTGAATGTCTTGTGAACGAGACGAAGATTCTTCATCTCCTTTATCCTCATCCTCACATTCTTGCTTTGCATAATCTCTACGAAGATGAATTTCACCTCCATATAGTTCTCGATCTCTGTTCTTCCGATCTCCTTCGGCGAATTAATCTCCAGGTTTTTTCTGAGGCGGAGGCTGCTTTGGTTATGTCGCAACTGATGAGTGCGTTGGCTCATTGTCACCGTCACGGCGTTGCGCACCGTGATATTAAGCCGGATAACATTCTGTTTGACGAGTGGAATTCGTTGAAACTCGCGGATTTCGGATCGGTTGAGATGTTTAAGCTGGGAGAAGAATCGATGAGCGGAGTCGTCGGAACGCCGTACTACGTGGCGCCGGAAGTGCTGGCTGGAAAAAACTACGGCGAGAAGGTCGATGTGTGGAGCGCCGGTGTGGTTTTGTACGTTATGTTGGCTGGTTTTCCGCCGTTTCAGGGAGAATCGGTTGTTGAGATCTTTCATGCGGTGTTGCGAACGAATTTGAGATTTCCGCCTAGAGTTTTCCACTCCGTATCGCCCATGGCGAAAGACTTGCTTCGAAAAATGCTCTGTAAAGATGTTTCCAGGAGACTCTCCGCCGAACAAGTCCTCAGGCATCCATGGATAACAGCTGGGGGGGAAACAGGCCGGCAAAGGAACTAG 834 49.28 MSDALRRDYQVNEEIGRGRFGTVFRCISRAFGGFYAVKSMDKRRISAGDSLDSECLVNETKILHLLYPHPHILALHNLYEDEFHLHIVLDLCSSDLLRRINLQVFSEAEAALVMSQLMSALAHCHRHGVAHRDIKPDNILFDEWNSLKLADFGSVEMFKLGEESMSGVVGTPYYVAPEVLAGKNYGEKVDVWSAGVVLYVMLAGFPPFQGESVVEIFHAVLRTNLRFPPRVFHSVSPMAKDLLRKMLCKDVSRRLSAEQVLRHPWITAGGETGRQRN 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2077895 2079363 - Cp4.1LG08g03440.1 Cpe08g00333 473299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00333 277 SUPERFAMILY Protein kinase-like (PK-like) 6 267 IPR011009 -
Cpe08g00333 277 Gene3D Transferase(Phosphotransferase) domain 1 2 276 - -
Cpe08g00333 277 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 274 - -
Cpe08g00333 277 PIRSF ILK 2 263 - -
Cpe08g00333 277 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cpe08g00333 277 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1 3 274 - -
Cpe08g00333 277 ProSiteProfiles Protein kinase domain profile. 9 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00333 277 CDD STKc_CAMK 8 265 - -
Cpe08g00333 277 Pfam Protein kinase domain 9 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00333 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cpe08g00333 277 SMART serkin_6 9 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00333 - - K08794 cmax:111474015 522.316
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01516 Cpe08g00333 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00014 Cpe-Chr4:153707 Cpe08g00333 Cpe-Chr8:2077895 1.53E-105 dispersed
Cpe05g00839 Cpe-Chr5:5398646 Cpe08g00333 Cpe-Chr8:2077895 3.43E-110 dispersed
Cpe08g00333 Cpe-Chr8:2077895 Cpe01g01654 Cpe-Chr1:10260983 6.57E-69 dispersed
Cpe03g01516 Cpe-Chr3:11877354 Cpe08g00333 Cpe-Chr8:2077895 7.21E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g702 . . . . . Bpe14g01252 . . . . Cma06g01327 Cma14g01812 Car06g01140 Car14g01625 . Cpe08g00333 Cpe03g01516 . . . . . . . . . . . . . . . . Cone7ag0322 Cone4ag0328 Lsi05g01729 . . Cme06g00496 . Blo07g00261 . Bda13g00065 . . Bma02g00785 . . Cmo06g01331 Cmo14g01850 . . . . . . . . . . . . . Cla05g00447 . . . . . . . Csa03g01212 Chy06g00475 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001788 1 1 1 1 2 1 4 2 1 2 2 2 4 2 2 3 2 3 4 2 2 2 2 1 4 2 2 2 1 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62543 PF00069 Pkinase 2.70E-71 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00333 Cpe_Chr08 FPKM 3.482456 0.0 0.0 0.0 1.46697 4.119368 0.0 0.0 0.0 0.0