Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00341 ATGGATGGAACTGTTTTTGCCCCTGCCTTGGAAGGGATTCAGCATGTCAAATCTGAAGCAGGGGAGATTTTGACCAAGCCTTTCTTGGAAGTGTGCAAACATATTTTGCCTGTTATAGATAAGTTTGGAGCTTCTATGGCACTTGTTAAAACTGACATTGGAGGCAACATCTCGAGATTGGACGCCAAGTATTGTTCCAACCCACCTGCATTCAAGTACTTGTATCACTTGGTGAAGCCTGAGATTGAAACTAATACTGCAAAAGGATCATCCAGTTGCACAAATGGTCTTCTTTGGTTGACAAGAGCATTGGATTTCTTGGTACAACTGTTTCGCAACTTACTGGAGCATCAGGATTGGACAATGACCCGTGCTTGTACAGAAGCATATGGCAGAACCTTGAAAAAGTGGCATGGCTGGCTGGCCAGTTCAAGTTTCACTGTCGCCATGAAGCTTGCTCCCGATCGTAAGAAGTTTATGGATGTTCTATCAGGCAATGGCAATGTTGAAGCTGACATTGAGAAATTTTGTACAAAATTTTCACCTCTCCTCGCAGAGAATCACAAATTTCTGGCTAGCTTTGGCTTGGACGATCTTAAGGCGTCTTAA 609 43.35 MDGTVFAPALEGIQHVKSEAGEILTKPFLEVCKHILPVIDKFGASMALVKTDIGGNISRLDAKYCSNPPAFKYLYHLVKPEIETNTAKGSSSCTNGLLWLTRALDFLVQLFRNLLEHQDWTMTRACTEAYGRTLKKWHGWLASSSFTVAMKLAPDRKKFMDVLSGNGNVEADIEKFCTKFSPLLAENHKFLASFGLDDLKAS 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2124061 2127542 + Cp4.1LG08g03340.1 Cpe08g00341 473307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00341 202 PANTHER GLYCOLIPID TRANSFER PROTEIN-RELATED 1 199 - -
Cpe08g00341 202 SUPERFAMILY Glycolipid transfer protein, GLTP 14 199 IPR036497 -
Cpe08g00341 202 PANTHER GLYCOLIPID TRANSFER PROTEIN (GLTP) FAMILY PROTEIN 1 199 - -
Cpe08g00341 202 Pfam Glycolipid transfer protein (GLTP) 23 163 IPR014830 GO:0005737|GO:0120009|GO:0120013
Cpe08g00341 202 Gene3D Glycolipid transfer protein 4 201 IPR036497 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00341 - - - csv:101206827 362.844
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01525 Cpe08g00341 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00341 Cpe-Chr8:2124061 Cpe13g00667 Cpe-Chr13:6284563 3.26E-48 dispersed
Cpe03g01525 Cpe-Chr3:11917767 Cpe08g00341 Cpe-Chr8:2124061 7.49E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g732 . . . . . Bpe14g01264 . . . . Cma06g01314 Cma14g01821 Car06g01128 Car14g01633 . Cpe08g00341 Cpe03g01525 Bhi01g00713 . . . Hepe05g1667 . . . . . . . . . Cone14ag0160 Cone15ag0171 Cone7ag0332 Cone4ag0337 Lsi05g01744 . . Cme06g00478 Blo02g00752 Blo07g00271 . Bda13g00054 . . Bma02g00767 . . . Cmo14g01861 . . . . . . . . . . . . . Cla05g00434 Cam05g0472 Cec05g0481 Cco05g0481 Clacu05g0469 Cmu05g0447 Cre05g0509 . Csa03g01196 Chy06g00460 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004412 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00341 Cpe_Chr08 FPKM 2.161754 2.332128 1.724854 1.522847 4.198558 3.78694 4.040996 3.301614 2.978457 3.375932