Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00342 ATGGGCACCTCTGTCAAGGGCAACTCTGTAAAGGGCCTCTTAAAAGGACTAAGATACATTTCACAGATTTTCGATGAAAAGGAACAGGAAATGCAGATTGGGCTTCCCACTGACGTTAAACATGTTGCTCATATTGGATGGGATGGTCCATCTGGTAATCAAAATAATCCTGGCTGGATGAACGAGTTCAAATCTTCGCCACAAGACTCAGGGGATTTGGTGAATACTAGTGGGGAACTCCCCAGCAAAGAGTCTGGAGAGATAGATGTGCAAAAGGCAAATCGATCTCGAAAGTCAAAATCGCAAACATCATCAGACACGTCTTTAGACTCTTCTTCTGCTCGGCGACACTCTGAGAAAGGTTCTAGGCGACAACGCTCATCCTGCCCTTCAGGCGAATCTGCTGCAGAAGGTAGTAATCGAAGCTCACGACGTCATCGTAGTTCGAATCAAGGGGGTTCATCAAGCTCAGAAAATCCTGCCCCAAAACACTCACATCGGAGGAAATCTAAGGGGTCATCTGACGGGGGTGAATCAACAAAATCCTCTAGATCAAGGGAGAATAACTCTTTAACAGACATACCAACCCCAGTGTTGGAAGCAGTTGATGAAGAACAGGGGTGA 624 46.15 MGTSVKGNSVKGLLKGLRYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSGNQNNPGWMNEFKSSPQDSGDLVNTSGELPSKESGEIDVQKANRSRKSKSQTSSDTSLDSSSARRHSEKGSRRQRSSCPSGESAAEGSNRSSRRHRSSNQGGSSSSENPAPKHSHRRKSKGSSDGGESTKSSRSRENNSLTDIPTPVLEAVDEEQG 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2128775 2130111 + Cp4.1LG08g03380.1 Cpe08g00342 473308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00342 207 MobiDBLite consensus disorder prediction 97 111 - -
Cpe08g00342 207 CDD CRIB 31 66 - -
Cpe08g00342 207 MobiDBLite consensus disorder prediction 112 126 - -
Cpe08g00342 207 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC5-LIKE 9 204 - -
Cpe08g00342 207 MobiDBLite consensus disorder prediction 176 195 - -
Cpe08g00342 207 Pfam P21-Rho-binding domain 32 74 IPR000095 -
Cpe08g00342 207 MobiDBLite consensus disorder prediction 145 160 - -
Cpe08g00342 207 SMART PBD_5 33 70 IPR000095 -
Cpe08g00342 207 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 9 204 IPR044510 -
Cpe08g00342 207 MobiDBLite consensus disorder prediction 49 82 - -
Cpe08g00342 207 ProSiteProfiles CRIB domain profile. 33 46 IPR000095 -
Cpe08g00342 207 MobiDBLite consensus disorder prediction 44 207 - -
Cpe08g00342 207 Gene3D CRIB domain 26 73 IPR036936 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00342 - - - csv:101211802 243.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00342 Cpe-Chr8:2128775 Cpe09g00893 Cpe-Chr9:8126876 1.16E-25 dispersed
Cpe03g01526 Cpe-Chr3:11921819 Cpe08g00342 Cpe-Chr8:2128775 4.03E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g733 . . . . . . . . . . Cma06g01313 Cma14g01822 Car06g01127 Car14g01635 . Cpe08g00342 . Bhi01g00711 . . . Hepe05g1668 . . . . . . . . . . . . . Lsi05g01745 . . . . . . . . . . . . Cmo06g01321 Cmo14g01862 . . . . . . . . . . . . . . . . . . . . . Csa03g01195 Chy06g00459 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000834 1 5 1 3 2 3 5 2 3 3 3 2 5 3 3 4 1 2 5 3 3 3 3 3 3 3 2 5 3 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00342 Cpe_Chr08 FPKM 3.46047 2.768539 4.818548 3.957977 15.841265 18.654913 19.135883 0.70436 0.53603 1.020986