Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00343 ATGGCTGCGCTAGCGAGCTCTGTGCTTCACTCGCCACTCCAGATCTGTTCTTCCGATTGTTCTTCTTCTGGGTTTCTATCTCCATCCAGAATCCATGGGTTTGCACCCAGTTTCAAGCTCAAGTGTTCCAGCCGCCGGCCTCTGCTTTCCGGCGACGGCCGACCCAGAAGAAGTTGCTATTTGAAGTCGGCTTCCGATTCCCCTCCTTCTCTTGATGATGATTCCAAGGCTAACTCTGAACTCCTTGCATCCTTGAAGCTCAAGCTACTGAAGGCAGATGAGGCTGCTAAAGAGATTGAAGCTGCTGGAGGGCCTGTGGACCTCTCTGTTGATCTTGACAAATTGCAAGGGAGATGGAAACTGATATACAGTAGTGCATTCTCGTCTCGCACTCTAGGCGGAAGTCGACCGGGACCTCCCACGGGAAGGCTACTTCCGATCACTCTTGGTCAGCGGATCGACGTCATCAGCAAAGATTTCGATAACATCGTAGAGCTCGAGTTAGGTGCTCCTTGGCCACTACCTCCTGCTGAAGTCACTGCTACATTAGCTCACGTGTTTGAAATCATAGGTTCTGCTAAGATAAAGATAACTTTTCAGAAAACCACCGTGAAAGCCACTGGAAACTTGTCACAGCTTCCTCCATTAGAGGTACCTCGGCTTCCAGATGCGCTAAGGCCTCCATCCAACACTGGAAGTGGCGACTTTGAAGTCACTTACCTTGACAATGATACTCGGATCACCAGAGGAGATAGAGGAGAACTCAGAGTGTTTGTTATTTCATAA 786 49.49 MAALASSVLHSPLQICSSDCSSSGFLSPSRIHGFAPSFKLKCSSRRPLLSGDGRPRRSCYLKSASDSPPSLDDDSKANSELLASLKLKLLKADEAAKEIEAAGGPVDLSVDLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQRIDVISKDFDNIVELELGAPWPLPPAEVTATLAHVFEIIGSAKIKITFQKTTVKATGNLSQLPPLEVPRLPDALRPPSNTGSGDFEVTYLDNDTRITRGDRGELRVFVIS 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2131453 2133932 - Cp4.1LG08g03300.1 Cpe08g00343 473309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00343 261 PANTHER - 86 261 IPR039633 -
Cpe08g00343 261 Coils Coil 82 102 - -
Cpe08g00343 261 PANTHER PLASTID-LIPID-ASSOCIATED PROTEIN 6, CHLOROPLASTIC 86 261 - -
Cpe08g00343 261 Pfam PAP_fibrillin 89 258 IPR006843 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00343 - - - mcha:111015945 374.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00412 Cpe-Chr4:4805995 Cpe08g00343 Cpe-Chr8:2131453 8.49E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g736 . . . . . Bpe14g01266 . . . . Cma06g01312 . Car06g01126 . . Cpe08g00343 . Bhi01g00710 . . . Hepe05g1669 . . . . . . . . . . . Cone7ag0334 Cone4ag0341 Lsi05g01746 . . Cme06g00476 Blo02g00754 Blo07g00272 . Bda13g00052 . Bpe13g00548 Bma02g00765 . . Cmo06g01320 . . . . . . . . . . . . . . Cla05g00432 Cam05g0470 Cec05g0479 Cco05g0479 Clacu05g0467 Cmu05g0446 Cre05g0507 . Csa03g01194 Chy06g00458 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009193 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00343 Cpe_Chr08 FPKM 11.904489 12.318043 13.057211 12.578083 8.809266 10.988223 9.551039 14.656419 17.225836 15.835652