Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00346 ATGGTGAAATTCTCGAAGGAATTGGAAGCTCAACTGATTCCTGAATGGAAAGATGCGTTCGTCAATTACTGGCACCTCAAGAAGCTCGTTAAGAGAGTCAAGCTCTCTAGAACCCCTGTTCCTCCTCCTCCTCCTTCCTCCGCCGCCTCACTTTTTTCATCTCTCGCCGCCCACTTCCCCCTCCGCCTCCTCCGCCGCCGCCGCCGTCCCCTTGATGCCGATCACCTCTCTCAGGTCAAAAAGAGTGAAGATGGTATCGACGTTAACGAAGATCGCGAAACCGAGCTTTCCCAGTTCTTCTCCGAAGAAGACGAGGTGAAGATGTTTTTCGAGACATTGGACGAAGAATTGGATAAAGTGAACGAGTTTTATGGGAGTAGAGAGAGTGAGTTTGTGGAGAGAGGGGACAGTCTTAGAGAGCAGCTTGGAATTTTGCTTGAATTCAAACGGATTCTTGAACATCGCCGCCGTAAAACTTCGCCGGCCGGCGGCTTTTCCCGGTCGTCCTCTTTTTCTCCTCGCCACTCCAATTTTTCTGAGAACTCGGAATCAAACGAAGCGTCAGCGGAAGTATCGGAGACGGATGAAGCAATCGCTGCATTGGAGAGGCACGGGGTCACGTTCATTAACGCCGCGGTGAGAGGAAAGACGAAGAAAGGAAATAAGCCGAAGATGGCGTTGCGAGTCGACATTCCAGCCACCACTCCGTCGAGGACCATCTCCGCCGTCATGGGGATGCTGTGGGAGGACCTCATCAACAATCCGAACAAGGATGCCTCCGGCGACTCGATCAGCCGGAAGAAGATCCAGTGGTCGGAGAAGATGCTTCGAGGCGCCTTTGTTGAGCTCTACAAAGGCCTCGGCCTCCTCAAAACCTTCAGTTCATTGAATATGAAAGCGTTCGTAAAGATTTTGAAGAAATTCGACAAGGTGGCTAACCAGAAGGCGTCAACTACATACCTTCAACAGGTGAAAAGGTCGCCATTTATCAGCTCCGATAAGGTGGTAAGGCTAATGGACGAAGTGGAATCCATATTCACAAAGCACTTCGCCAACAATGACAGGAAAAAGGCAATGAAATATTTGAGGCCTCAGCAGCCTAAAGATTCCCACATGACCACCTTCTTTGTTGGTTTGTTTACGGGTTGCTTTGTGTCGTTGTTTATTGTATACGCAATTTTGGCGCATTTGTCTGGTGTCTTCTCTCGAACAAATGAAGTTTCTTACATGGATGCTGTTTATCCTGTTTTCAGTATGTTTGCGTTGCTAAGCTTGCACATGTTCGTGTATGGGTGCAATTTGTTCACGTGGAAACATGCGAGGATCAATTACAACTTCATTTTTGAGTTTCAATCGAGTACTGCGCTCAAATATCGTGATGCTTTCCTTGTATGCACCATCACCATGACTGCTGTGGTCGGAGCTTTAGTCATTCACTTAATTTTAGGACTCACTCGCTTCTCATCTGTCCAAGTTGATTCCATTCCCGGGCTTCTTCTACTTGTTAATCACTCTGCTGAGGCTCATGGAATCCGCTACCTGCTACTTCTTTGCGGGTTCCTTATGACCACCTTCTTTGTTGGTTTGTTTACGGGTTGCTTTGTGTCGTTGTTTATTGTATACGCAATTTTGGCGCATTTGTCTGGTGTCTTCTCTCGAACAAATGAAGTTTCTTACATGGATGCTGTTTATCCTGTTTTCAGTATGTTTGCGTTGCTAAGCTTGCACATGTTCGTGTATGGGTGCAATTTGTTCACGTGGAAACATGCGAGGATCAATTACAACTTCATTTTTGAGTTTCAATCGAGTACTGCGCTCAAATATCGTGATGCTTTCCTTGTATGCACCATCACCATGACTGCTGTGGTCGGAGCTTTAGTCATTCACTTAATTTTAGGACTCACTCGCTTCTCATCTGTCCAAGTTGATTCCATTCCCGGGCTTCTTCTACTTATCACTCTGCTGAGGCTCATGGAATCCGCTACCTGCTACTTCTTTGCGGGTTCCTTCGGAATGCGTCGAGGCGAGGTCTGCAAATCCGGGACGTTGTACTGGGAGTTGGCTTACCTCATTTCATTTTTGCCATACTATTGGCGTGCAATGCAGTGTGCAAGAAGATGGTTTGATGACAATGATTTGGACCATTTGGCTAACATGGGAATGCTTGTTTCTAGTGAAGATTTAGCTGCTCGAGTAGCAGTCGAAACTACGCTAAAATCTACGTGTGTGTTCGTATAG 2238 46.87 MVKFSKELEAQLIPEWKDAFVNYWHLKKLVKRVKLSRTPVPPPPPSSAASLFSSLAAHFPLRLLRRRRRPLDADHLSQVKKSEDGIDVNEDRETELSQFFSEEDEVKMFFETLDEELDKVNEFYGSRESEFVERGDSLREQLGILLEFKRILEHRRRKTSPAGGFSRSSSFSPRHSNFSENSESNEASAEVSETDEAIAALERHGVTFINAAVRGKTKKGNKPKMALRVDIPATTPSRTISAVMGMLWEDLINNPNKDASGDSISRKKIQWSEKMLRGAFVELYKGLGLLKTFSSLNMKAFVKILKKFDKVANQKASTTYLQQVKRSPFISSDKVVRLMDEVESIFTKHFANNDRKKAMKYLRPQQPKDSHMTTFFVGLFTGCFVSLFIVYAILAHLSGVFSRTNEVSYMDAVYPVFSMFALLSLHMFVYGCNLFTWKHARINYNFIFEFQSSTALKYRDAFLVCTITMTAVVGALVIHLILGLTRFSSVQVDSIPGLLLLVNHSAEAHGIRYLLLLCGFLMTTFFVGLFTGCFVSLFIVYAILAHLSGVFSRTNEVSYMDAVYPVFSMFALLSLHMFVYGCNLFTWKHARINYNFIFEFQSSTALKYRDAFLVCTITMTAVVGALVIHLILGLTRFSSVQVDSIPGLLLLITLLRLMESATCYFFAGSFGMRRGEVCKSGTLYWELAYLISFLPYYWRAMQCARRWFDDNDLDHLANMGMLVSSEDLAARVAVETTLKSTCVFV 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2147057 2153480 - Cp4.1LG08g03310.1 Cpe08g00346 473312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00346 745 Pfam SPX domain 2 324 IPR004331 -
Cpe08g00346 745 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 2 502 - -
Cpe08g00346 745 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 522 652 - -
Cpe08g00346 745 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 652 732 - -
Cpe08g00346 745 Pfam EXS family 414 502 IPR004342 GO:0016021
Cpe08g00346 745 Pfam EXS family 662 720 IPR004342 GO:0016021
Cpe08g00346 745 Pfam EXS family 564 658 IPR004342 GO:0016021
Cpe08g00346 745 MobiDBLite consensus disorder prediction 159 194 - -
Cpe08g00346 745 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 2 502 - -
Cpe08g00346 745 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 522 652 - -
Cpe08g00346 745 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 652 732 - -
Cpe08g00346 745 CDD SPX_PHO1_like 3 318 IPR034092 -
Cpe08g00346 745 MobiDBLite consensus disorder prediction 162 188 - -
Cpe08g00346 745 ProSiteProfiles SPX domain profile. 2 322 IPR004331 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00346 K24195 XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1 - csv:101206345 784.637
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01529 Cpe08g00346 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00346 Cpe-Chr8:2147057 Cpe09g00260 Cpe-Chr9:1521352 1.42E-50 dispersed
Cpe03g01529 Cpe-Chr3:11932903 Cpe08g00346 Cpe-Chr8:2147057 1.55E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g741 . . . . . Bpe14g01269 . . . . Cma06g01309 Cma14g01826 Car06g01123 Car14g01638 . Cpe08g00346 Cpe03g01529 Bhi01g00707 . . . Hepe05g1672 . . . . . . . . . Cone14ag0163 Cone15ag0173 . Cone4ag0344 Lsi05g01749 . . Cme06g00473 Blo02g00759 Blo07g00275 Bda11g00642 . . Bpe13g00545 Bma02g00764 Bma06g01609 . Cmo06g01316 Cmo14g01867 . . . . . . . . . . . . . Cla05g00429 Cam05g0467 Cec05g0476 Cco05g0476 Clacu05g0464 Cmu05g0443 Cre05g0504 . Csa03g01191 Chy06g00455 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005316 1 1 2 3 2 1 2 1 1 1 1 1 2 1 0 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00346 Cpe_Chr08 FPKM 19.772123 17.210819 30.928486 28.26465 21.239872 22.157114 17.807016 52.430077 55.066067 50.067974