Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00348 ATGAGAGCAAAGGCCTGGATGAATGAGCAAATTTTACGCCTCAAGAGTAAATTTAGCAAGATGATAAACTGTATTCGTTCAGGGGATCAATTAAAAGTGGATGAAATGATGCATTCATCAGATTCTCTGGCAACTCGAGACTATTCAGCCAGTGGTTTTTCATCACGTACTGGGGAGGTGGAACCGAAGGTGGATAATGCCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGTTATCTGAATTATGAGGAAGCACGTGCTTTACTTGGAAGGCTCGAGTACCAAAAGGGTAACATAGAAGCTGCTCTTCATGTTTTTGAAGGAATAGACATTGTTGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGAGATATGAACAAAATAGACGGCAATCACAAAGTGATGTTGTGCCTACTATGTCTATGCATGCCATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCAGCAAAATCTTGCAAACTACTTTTAGACACTGTTGAATCTGCATTACCAGAAGGCTTACCTGAAAATTTCGCCAATGATTGTAAATTGCAAGGGACACTAACAAAGGCTGTTGAATTGCTTCCAGAATTGTGGAAATCTGCCGGGTCTCCAGAAGAATCTATCTTGTCATACAGGCGTGCCCTTATTTACCAATGGAATCTAGAAATGGAAACTAGAGCAAAGATAGAAAAAGAGTTTGCAATTTTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCCAATCTCCGTTTGCAGATGGAAAGCTCATTTGTGCCGAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTGTTGGGAAAGTATATACATGGATTGGTTGTATGGGACCCATCAATAACAGAGCATCTCTCGTTTGCAATGTCTATTGTTGGGGAATTTGGTGCTTTAGCTAATGAGGTTGAACAATTGCCTCCAGGAACTATAGGAAGGAAAGAGAAGTACTGGACACTAGCTCTTTGTTACTACGGGGAAGGTAAAAGCTTAGTTGCGTTGAACCTTTTGAAGAACTTCTTGAATAACAAAGATAATGTAGACTGCTTACTGGAATTGTTGTTAGCTTCAAAGCTCTGTGGAGAGAATTTGGTTTGTCTCGATGAGGGGGTGACTTACATATTGAGAGTGCTTTCGGAACTGGGTGGTAGATGCATCCAGATGGTTTCTATTGCTAATTGCTTACATGGTGTATTACTGTCAGCCATATCCAAATCAATTGCTTCTGATTCTCTTAAAACTTTGAAGCAATCTGAGGCACTCAAGGCACTACAAACCGCTGAGCAACTGATGAAACAAAGGGATCCATTCATTGTGTATCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTGGATATAGCTCTATACTACGCAAAACAGCTAGTGAAACTCGAGGCTGGGTCTAGTGTGAAGTCGTACATCCTCTTGGCCAGAATATTGTCTTCCCAGAAACGGTTTGGGGATGCAGAGACTGTACTCAACGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGCGAACTCTTACGAACTAAAGCTAAGCTCCAGATTGCACAGGGCCAGTTAAAGAGCAGTATAGAAACATACACTCATCTTCTTGCTATAATTCGAGTCCGGACTAAAAGTAGTGGAGTTGGAAAGATGCTTTCAAAGGATGTGAGAACATCTGACAGAAGTCTGGAAATAGAAACATGGAATGATTTGGCCAATATTTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATCTGCCTATCAAAATTGCAGGCAATCAATCCATATTCTGCTGCTAAATGGTATTCCAGAGGTTTACTGTATGAGTCTAAGGGTCTCCCACGAGATGCTTTGCAAGCATACAACAAAGGATTAGACATCGATCCTAACCATGTTCCCAGCATGATATCAACTGCCCGTCTTCTCCAACAACTGGGCGGCAGGCAGTCATTTCCTGTGGTAAGAAGCTTGTTAACCGACGCCCTTCGACTTGATCGAGCAAACCCATCTGCATGGTACAATCTCGGGTTGCTATACAAAGCTGATGTCGGGGCATCCGTGCTGGAGGCTGCCGAATGTTTTGAGGCTGCAACTCTGCTTGAAGAGTCAGCTCCAGTTGAACCTTTCAGATGA 2199 42.34 MRAKAWMNEQILRLKSKFSKMINCIRSGDQLKVDEMMHSSDSLATRDYSASGFSSRTGEVEPKVDNANIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIVAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLLLDTVESALPEGLPENFANDCKLQGTLTKAVELLPELWKSAGSPEESILSYRRALIYQWNLEMETRAKIEKEFAIFLLYSGCDASPPNLRLQMESSFVPRNNMEEAILLLMDLLGKYIHGLVVWDPSITEHLSFAMSIVGEFGALANEVEQLPPGTIGRKEKYWTLALCYYGEGKSLVALNLLKNFLNNKDNVDCLLELLLASKLCGENLVCLDEGVTYILRVLSELGGRCIQMVSIANCLHGVLLSAISKSIASDSLKTLKQSEALKALQTAEQLMKQRDPFIVYHLCLEYAEQRKLDIALYYAKQLVKLEAGSSVKSYILLARILSSQKRFGDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKSSIETYTHLLAIIRVRTKSSGVGKMLSKDVRTSDRSLEIETWNDLANIYTSLSQWRDAEICLSKLQAINPYSAAKWYSRGLLYESKGLPRDALQAYNKGLDIDPNHVPSMISTARLLQQLGGRQSFPVVRSLLTDALRLDRANPSAWYNLGLLYKADVGASVLEAAECFEAATLLEESAPVEPFR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2168722 2175205 + Cp4.1LG08g03400.1 Cpe08g00348 473314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00348 732 SMART tpr_5 494 527 IPR019734 GO:0005515
Cpe08g00348 732 SMART tpr_5 530 563 IPR019734 GO:0005515
Cpe08g00348 732 SMART tpr_5 152 185 IPR019734 GO:0005515
Cpe08g00348 732 SMART tpr_5 620 653 IPR019734 GO:0005515
Cpe08g00348 732 SMART tpr_5 586 619 IPR019734 GO:0005515
Cpe08g00348 732 SMART tpr_5 691 726 IPR019734 GO:0005515
Cpe08g00348 732 SUPERFAMILY TPR-like 439 559 IPR011990 GO:0005515
Cpe08g00348 732 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Cpe08g00348 732 Gene3D Tetratricopeptide repeat domain 571 729 IPR011990 GO:0005515
Cpe08g00348 732 Pfam Tetratricopeptide repeat 623 653 IPR001440 GO:0005515
Cpe08g00348 732 Pfam Tetratricopeptide repeat 468 523 - -
Cpe08g00348 732 PANTHER PROTEIN NPG1 14 732 IPR043376 -
Cpe08g00348 732 Gene3D Tetratricopeptide repeat domain 153 567 IPR011990 GO:0005515
Cpe08g00348 732 PANTHER OS10G0471400 PROTEIN 14 732 - -
Cpe08g00348 732 SUPERFAMILY TPR-like 531 702 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01531 Cpe08g00348 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00348 Cpe-Chr8:2168722 Cpe11g00118 Cpe-Chr11:649898 0 dispersed
Cpe15g00093 Cpe-Chr15:703413 Cpe08g00348 Cpe-Chr8:2168722 0 wgd
Cpe03g01531 Cpe-Chr3:11950278 Cpe08g00348 Cpe-Chr8:2168722 4.28E-51 wgd
Cpe05g00076 Cpe-Chr5:372927 Cpe08g00348 Cpe-Chr8:2168722 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00348 K21843 - csv:101206105 1233.39