Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00356 ATGAACTGCTCTATCTCCGGCGAGATTCCGGAAGAGCCAGTTGTCTCTAAGAATTCTGGATTACTCTTCGAGAAGCGGTTAATCGAGAGGCACATTTCAGACTATGGGAAATGCCCTGTTACAGGCGAACCTCTTTCCATTGATGACATCGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTCGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCACTGGAGCAACAGTTGCATACAGCCAGACAGGAACTTAGTCATGCCTTATATCAGCATGATGCAGCCTGTCGTGTAATTGCAAGACTTAAAAAGGAACGGGATGAAGCTAGGTCATTACTTGCTCAGGCAGAGAGGCAGATGCCCTTGTCATCAACTTCAATATCATCCAATGCTGCTGTCAATGTTAATGGCAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCAGGAATATCAGCCACTGTTATCTCTGAGCTCACAGATTGTAATGCTTCCCTTTCACAACAAAGGAAGAAGCGGCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTTTAGAGAGTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAACAAACCAGGGATTATATCTCTTGACATCAATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTGAGTGGTCATTCAAAGAAGGTAACAAGTGTCAAATTTGTCACCCGAGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTCCGTGTGTGGCAACCATCTGATGACGGGAACTATAATTGTAGACACATTTTAAAGGATCACACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAACAACTTCTTTGTTACTGCCTCCCTTGATAACACATGGTGTTTTTATGACCTTGCTTCAGGATTATGCCTAACCCAGGTTGCAGAGGCTTCAGGAACGGAGGGCTACACATCTGCTGCCTTCCATCCTGATGGTCTCATCCTTGGAACGGGCACGTCGGAGGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCTAGATTTGATGGACACGTTGGGGCAGTGACAGCTATATCTTTTTCTGAAAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAATTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCCGTGGAATTTGACCATAGTGGATCTTACCTTGCAATTGCTGGCTCAGATATAAGAGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGCATCAAAACTATTCCAGATTTATCTGGCACAGGTAAAGCAACCTGCCTAAAATTCGGAACGGATGCAAAATACTTGGCAGTCGGATCCATGGATCGAAATCTTCGGATTTTTGGTGTGCCTGGGGAAGACGGCCCGATGGAGACATAA 1566 44.25 MNCSISGEIPEEPVVSKNSGLLFEKRLIERHISDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISSNAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNASLSQQRKKRQIPPTLVPVEALESYTQISSHPLHKTNKPGIISLDINHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVTRDDLFLTGSADKTVRVWQPSDDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYDLASGLCLTQVAEASGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGTDAKYLAVGSMDRNLRIFGVPGEDGPMET 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2206858 2215002 + Cp4.1LG08g03220.1 Cpe08g00356 473322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00356 521 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Cpe08g00356 521 SUPERFAMILY RING/U-box 1 53 - -
Cpe08g00356 521 SUPERFAMILY WD40 repeat-like 220 510 IPR036322 GO:0005515
Cpe08g00356 521 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 520 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Cpe08g00356 521 Pfam Prp19/Pso4-like 64 129 IPR013915 -
Cpe08g00356 521 CDD WD40 223 510 - -
Cpe08g00356 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 430 IPR001680 GO:0005515
Cpe08g00356 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Cpe08g00356 521 Gene3D - 199 512 IPR015943 GO:0005515
Cpe08g00356 521 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Cpe08g00356 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 423 - -
Cpe08g00356 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Cpe08g00356 521 Pfam WD domain, G-beta repeat 473 510 IPR001680 GO:0005515
Cpe08g00356 521 Pfam WD domain, G-beta repeat 385 421 IPR001680 GO:0005515
Cpe08g00356 521 Pfam WD domain, G-beta repeat 254 290 IPR001680 GO:0005515
Cpe08g00356 521 Pfam WD domain, G-beta repeat 299 336 IPR001680 GO:0005515
Cpe08g00356 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 345 IPR001680 GO:0005515
Cpe08g00356 521 SMART WD40_4 470 511 IPR001680 GO:0005515
Cpe08g00356 521 SMART WD40_4 424 463 IPR001680 GO:0005515
Cpe08g00356 521 SMART WD40_4 339 380 IPR001680 GO:0005515
Cpe08g00356 521 SMART WD40_4 252 291 IPR001680 GO:0005515
Cpe08g00356 521 SMART WD40_4 383 421 IPR001680 GO:0005515
Cpe08g00356 521 SMART WD40_4 207 249 IPR001680 GO:0005515
Cpe08g00356 521 SMART WD40_4 297 336 IPR001680 GO:0005515
Cpe08g00356 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515
Cpe08g00356 521 CDD RING-Ubox_PRP19 3 54 - -
Cpe08g00356 521 Coils Coil 113 133 - -
Cpe08g00356 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 291 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01541 Cpe08g00356 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00356 Cpe-Chr8:2206858 Cpe10g00519 Cpe-Chr10:3042569 6.39E-13 dispersed
Cpe03g01541 Cpe-Chr3:12003005 Cpe08g00356 Cpe-Chr8:2206858 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00356 K10599 - csv:101204424 989.178