Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00358 AGACCGATGAAGCTTGCGAGAGCCGGAATTTTGCGAGGGCTGGGCGTTCGGCGGTTTTCAGCGGAAACTCGCCGTCGTATCGAGGACGAGGGAGACTGGTTTTACGCCTCAGAATGGTGGGGGAACGATTACGACGGCGACGGCGACGGCCGCACTGTTTTCAGTTCAACATCTGAGAAAGGAAATGGCGTCGTCTCTGTTCTTTCATACCCTTCCTCCAGGCCTAGTGGGCTTCATTGGCCAGGGACTGGAAGGTGGCTTCAGCAAAGATATGCAGAGGTATGCCCTGGTTGCAAGAACGGGGAACGGTTCGGGATTCTTGGATATCAATGGCGAGTGCTTCGTTTCAATGACAATACTCGCCAAAGCACAGCTAAAGTAATGGCTGCTTACCGGGAATCAAAACCAGAGTCAATTTTCCTCATGCAGCAGGCGCATTGTTTGGCTGTTCCTTATCTAAAGAGTATGATATCAGTTGGGCTGACCACTATTGCATCTTGTGGGTATGATCTTTTGAATGCAATCCAAGGAAAACAAAATCTACGTATTTTATGTATTGGTCATGGTGGTGGGAGCTTGCCTCTATTTTTAGCAAGTAAAATTCAAGGTGCCAACGTTGACATAGTTGAAATCGACCCTCTTGTGATCTCGGCCTCAATCCAAGCCATGGGCTTCCCAGCGTTCTCAGTTATGACTGCATCAGGAGAGCATGCATTTGCCCGACCCGAATCCATTGACGATGTCATGTGGAAAGGCATCCATGAAAGACTTTTCCTCTACGAATTAGATGCAGAGGATTTCGTCTGCAACACGACCAATCTATACGACATGATCTTCATTGATGCTTACGATGGAGATGACATATTCCCGAACAAACTCTGGGATCCAAATTCCACATTTCTTGAAGCTCTCAGCAAGCGACTTCATCCTAAACATGGAACTGTGGTGGTGAATCTTCACTCTGATTCCGATCTCTTGACTTCTGATGGCTCTGTCCCATCTGTTCTTGAACATATATTGCCAATGGGAAAGTACGTATCTCGAATCGGTCGAGCGTACAAGGATGTTCTAACACGAGATGGGAGTTCTTCTGGTGAAAGTTCTGGTTTAGGATTCACAGTGGCGGTTCCGTGGGTTTGCAATACATCTCTGGTTGTGTGCAAAGGTTTCGAAATGAACGGTGAGTATCTCGACCGGGATCTTTTAATGAACACATTGATATCTAAATCCCTTGAAGTAGAAAGTCTTCTGAAGCTGCCATTTTCTTGTTTGGAGTATATAAAGAGAGGATTCAAGTCCAAAAGTTCGTTAGCACTGTTGGCGCTCGATCCCCCGAAAGCCAACTTCCTCTCTACGTCTCTCATGGCGGTCAATGCCAAGAAGCGATTGTCGCTCAGCAACAATGACGACGACGACGACAACGCGGCCGGTGTCTTTTTCCAGGCTATCGCGCTCCGTGTCCGAGTCCTCGATCTATAG 1479 47.53 RPMKLARAGILRGLGVRRFSAETRRRIEDEGDWFYASEWWGNDYDGDGDGRTVFSSTSEKGNGVVSVLSYPSSRPSGLHWPGTGRWLQQRYAEVCPGCKNGERFGILGYQWRVLRFNDNTRQSTAKVMAAYRESKPESIFLMQQAHCLAVPYLKSMISVGLTTIASCGYDLLNAIQGKQNLRILCIGHGGGSLPLFLASKIQGANVDIVEIDPLVISASIQAMGFPAFSVMTASGEHAFARPESIDDVMWKGIHERLFLYELDAEDFVCNTTNLYDMIFIDAYDGDDIFPNKLWDPNSTFLEALSKRLHPKHGTVVVNLHSDSDLLTSDGSVPSVLEHILPMGKYVSRIGRAYKDVLTRDGSSSGESSGLGFTVAVPWVCNTSLVVCKGFEMNGEYLDRDLLMNTLISKSLEVESLLKLPFSCLEYIKRGFKSKSSLALLALDPPKANFLSTSLMAVNAKKRLSLSNNDDDDDNAAGVFFQAIALRVRVLDL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2219326 2225413 - Cp4.1LG08g03140.1 Cpe08g00358 473324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00358 492 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 175 325 IPR029063 -
Cpe08g00358 492 PANTHER OSJNBA0004N05.3 PROTEIN 21 428 - -
Cpe08g00358 492 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 21 428 - -
Cpe08g00358 492 Gene3D Vaccinia Virus protein VP39 113 357 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00358 - - - cmos:111451388 790.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g782 . . . . . . . . . . Cma06g01293 . Car06g01110 . . Cpe08g00358 . . . . . . . . . . . . . . . Cone14ag0181 Cone15ag0191 . . Lsi05g01771 . . Cme06g00450 . Blo07g00288 Bda11g00649 . . Bpe13g00537 . Bma06g01617 . Cmo06g01301 . . . . . . . . . . . . . . . . . . . . . . Csa03g01169 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010243 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00358 Cpe_Chr08 FPKM 1.378651 1.233639 5.37326 4.816714 0.444144 0.227848 0.087873 0.0 0.0 0.0