Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00361 ATGCTACCCATCTCCTCCCTATCAAATTCTCCCACCATGGCCACCGCCGCCGCCGCCGCCGGAGCCTCCCTTTTCACCACCAAGCGCTGGCTCTCTGATGCTCTCCTTACAACCCCATCAGCCCTAATGTTTCCCATATTGTCCCGCTCTCTTGCCATTGAATCGGCCCCGCTTAGAGCTTTCTCGGAGAGGTGGCGGCCGGCTCTGGGAATTTCCGCCGCCGTTGTGCAGAGAAAGGCGGCTGTGACATTTGGGGTTGAAGAGGGTGTGGCGGATGAGACGGCGGAGGAGGGAGAAGGGCAAGTGGTGGACGGTGGTTCTCCAGTGGAATCCGGGAAAACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCACAGCTTGCTGACATCGTTCAGGATTATGGGGTCGCCGAGCTCATTGAGGTTCTTTATGACAGGAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGCATTGAAGATTGCAATAAAGTCATCGAAAATCTGGATGGAACTGCTTACATGGGCAGACTATTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAAGGACTTTTATATCCAGATTCTGAGTATGAACTTTATGTCAGTAACTTATCCTGGTCAGTAACATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTCGGAGCAAGGGTCATCTACGATGACGAGACCGGAAAGTCACGTGGATATGGCTTTGTATCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTTGTAATGAATTGGAACTTGAAGGCAGGGTAATACGTGTTAGCTTAGCTCAAGGAAAACAAGCTCAGGGGTAA 867 48.21 MLPISSLSNSPTMATAAAAAGASLFTTKRWLSDALLTTPSALMFPILSRSLAIESAPLRAFSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2232891 2237062 + Cp4.1LG08g03180.1 Cpe08g00361 473327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00361 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 192 IPR000504 GO:0003723
Cpe08g00361 288 PANTHER TRANSFORMER-2-RELATED 150 190 - -
Cpe08g00361 288 PANTHER TRANSFORMER-2-RELATED 197 285 - -
Cpe08g00361 288 PANTHER TRANSFORMER-2-RELATED 92 153 - -
Cpe08g00361 288 Gene3D - 78 194 IPR012677 -
Cpe08g00361 288 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 197 285 - -
Cpe08g00361 288 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 150 190 - -
Cpe08g00361 288 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 92 153 - -
Cpe08g00361 288 SMART rrm1_1 115 188 IPR000504 GO:0003723
Cpe08g00361 288 SMART rrm1_1 206 279 IPR000504 GO:0003723
Cpe08g00361 288 Gene3D - 195 288 IPR012677 -
Cpe08g00361 288 SUPERFAMILY RNA-binding domain, RBD 114 285 IPR035979 GO:0003676
Cpe08g00361 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 277 IPR000504 GO:0003723
Cpe08g00361 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 185 IPR000504 GO:0003723
Cpe08g00361 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00361 - - - cpep:111800338 550.436
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01544 Cpe08g00361 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01590 Cpe-Chr4:12392068 Cpe08g00361 Cpe-Chr8:2232891 3.58E-15 dispersed
Cpe08g00361 Cpe-Chr8:2232891 Cpe18g00878 Cpe-Chr18:7994528 2.47E-42 dispersed
Cpe03g01544 Cpe-Chr3:12017194 Cpe08g00361 Cpe-Chr8:2232891 1.78E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g784 . . Bda03g01097 . Bpe04g00983 . Bma04g01022 . . . . Cma14g01844 . . . Cpe08g00361 Cpe03g01544 . . . . . . . . . . . . . . Cone14ag0183 Cone15ag0192 . . Lsi05g01774 . . Cme06g00447 . . . . . . . . . Cmo06g01297 Cmo14g01887 . . . . . . . . . . . . . Cla05g00406 Cam05g0443 Cec05g0451 Cco05g0451 Clacu05g0440 Cmu05g0418 Cre05g0480 . Csa03g01166 Chy06g00428 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012811 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 0 1 1 1 0 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00361 Cpe_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.181649