Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00364 ATGGCCGCAACAATTTCTGCAAAATGGAGATTATCATCATCAACATGGTTGAATTTGAGCCAAAATTTCAACCCGAAATTCCGAGCTCAGCGCTGCAATCGGAGCTTCTTCCTTCCTGCTTTCGCCGCCAATCACTCATGCCGCCGCCACTTTCCTCCAAAGCCCTCTTCATTTCCAATGGCTATGGCCAATTTCTCCTCCGCCGCCTCTGCCCGCCGGGCTCGCCTCCGGGGGGTAATCTTCGACATGGACGGAACTCTGACAGTACCTGTCATCGATTTCGCTGCTATGTATAAATCCGTGCTTGGCGATGAGGATTACGCGAGAATCAAATCTCTAAACCCATCGGGAATCGATATCTTGCACATAATTCAGAGTTGGGCACCGGAGAAGCAGCGGAGGGCGTATGAGGTAATCGCCGATTTCGAACGCCAGGGAATCGAACGCCTGCAAATTATGCCCGGTGCTGCAGAGCTTTGTACATTTCTTGATTCCAAGAATATAAGGAGGGGACTAATCACTCGTAATGTAAAGGAAGCTGTTGATATTTTTCATAAGCGTTTTGGTTGGACATTTCATCCAGCATTAAGCAGGGAATTTGGTTCATATAAACCAAATCCCGCTCCGCTACTTCATATCTGCTCTTCTTGGGACGTCCTACCTAACCAAGTCATTATGGTTGGCGATAGCCTCAAAGATGATATTGGATGTGGCAAGCAAGCGGGAGCGTTCACATGTTTGCTAGACGAAACAGGAAGGTACAACTCGGAGCATTATGCCAACACGGATCTTGAACCAGATTTTAAAGCATCTACGCTTGGTGAAGTTCTTCATCTTTTGAAGGCGAATTTTGAGTTGACACCATGA 867 47.29 MAATISAKWRLSSSTWLNLSQNFNPKFRAQRCNRSFFLPAFAANHSCRRHFPPKPSSFPMAMANFSSAASARRARLRGVIFDMDGTLTVPVIDFAAMYKSVLGDEDYARIKSLNPSGIDILHIIQSWAPEKQRRAYEVIADFERQGIERLQIMPGAAELCTFLDSKNIRRGLITRNVKEAVDIFHKRFGWTFHPALSREFGSYKPNPAPLLHICSSWDVLPNQVIMVGDSLKDDIGCGKQAGAFTCLLDETGRYNSEHYANTDLEPDFKASTLGEVLHLLKANFELTP 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2256328 2260202 - Cp4.1LG08g03130.1 Cpe08g00364 473330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00364 288 SUPERFAMILY HAD-like 73 281 IPR036412 -
Cpe08g00364 288 Gene3D - 79 253 IPR023214 -
Cpe08g00364 288 PANTHER 4-NITROPHENYLPHOSPHATASE-RELATED 57 281 - -
Cpe08g00364 288 PANTHER OS02G0816100 PROTEIN 57 281 - -
Cpe08g00364 288 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 77 281 - -
Cpe08g00364 288 SFLD Haloacid Dehalogenase 77 281 - -
Cpe08g00364 288 CDD HAD_like 156 248 - -
Cpe08g00364 288 Pfam Haloacid dehalogenase-like hydrolase 79 245 IPR041492 -
Cpe08g00364 288 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 79 242 IPR006439 -
Cpe08g00364 288 Gene3D - 89 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00364 - - - csv:101221968 406.371
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01553 Cpe08g00364 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01553 Cpe-Chr3:12063496 Cpe08g00364 Cpe-Chr8:2256328 4.95E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g807 . . . Bda08g00010 . . . Bma05g01261 . . Cma06g01286 Cma14g01854 Car06g01104 Car14g01661 . Cpe08g00364 Cpe03g01553 . . . . . . . . . . . . . . . . Cone7ag0359 Cone4ag0371 Lsi05g01782 . . Cme06g00439 . . . . Bpe05g01116 . . . . Cmo06g01291 Cmo14g01899 . . . . . . . . . . . . . Cla05g00398 Cam05g0434 Cec05g0440 Cco05g0439 Clacu05g0429 Cmu05g0410 Cre05g0471 . Csa03g01154 Chy06g00418 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006077 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00364 Cpe_Chr08 FPKM 7.864865 8.106737 6.831572 8.301195 12.198689 9.697828 12.263868 18.708565 17.689201 21.188421