Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00370 ATGGCAGAAGTGAAGCTCCATGGAACTTGGCCGAGTCCTTTCAGTTACAGAGTGATTTGGGCGTTGAAGCTCAAAGGCATTCCCTACGAGTACGTAGAAGAAGATCTCTCCAACAAGAGCCCTCTGCTTTTGCACTACAATCCGGTTCACAAGAAGATTCCGGTGCTCGTCCATGGCGGAAAACCGATCTGTGAATCCATGGTCATCCTCGAGTACATCGACGAAACTTGGACGGAGAAGCCGCTGCTTCCGTCGGATCCTTTTGAGAGAGCGACGGCGAGATTCTGGATCAAATTCATTGAGGATAAGGGCCCTGCGGTTTTTATGATATTCCGTGCGAAGAGTGATGAAGAATTGGAGAATGCTAAGAAGCAGAGCTTAGAAATGCTGAGAACCGTCGAGGAATGGGGATTCCGCGGTGGCGATGGCAGAGAGAGGAAGTTCTTCGGCGGAGATGAGATCGGAATGGCGGATTTGGCGTTCGGCTGGGTTGCGCACTGGATAGGAGTGGTTGAAGAAGTGGTGGACGTCAAATTGCTGGACGCCAACGAGTTCCCTAAGGTGTATGCTTGGACTGAAAGATTCAAGGATGCGGCGGTGATCAGAGATAATCTACCGGACCGAAACCTAATGGCGGCAGCTTTCCGGCGACGGAGGGAACAATTGCTCCAATCCACTTAA 681 51.1 MAEVKLHGTWPSPFSYRVIWALKLKGIPYEYVEEDLSNKSPLLLHYNPVHKKIPVLVHGGKPICESMVILEYIDETWTEKPLLPSDPFERATARFWIKFIEDKGPAVFMIFRAKSDEELENAKKQSLEMLRTVEEWGFRGGDGRERKFFGGDEIGMADLAFGWVAHWIGVVEEVVDVKLLDANEFPKVYAWTERFKDAAVIRDNLPDRNLMAAAFRRRREQLLQST 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2308785 2309938 + Cp4.1LG08g03030.1 Cpe08g00370 473336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00370 226 CDD GST_C_Tau 87 218 IPR045074 GO:0004364|GO:0006749
Cpe08g00370 226 CDD GST_N_Tau 4 77 - -
Cpe08g00370 226 SFLD Main (cytGST) 1 224 - -
Cpe08g00370 226 Gene3D Glutaredoxin 1 85 - -
Cpe08g00370 226 Pfam Glutathione S-transferase, C-terminal domain 110 195 IPR004046 -
Cpe08g00370 226 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cpe08g00370 226 SFLD Main.3: Omega- and Tau-like 1 224 IPR045073 -
Cpe08g00370 226 Gene3D - 86 226 - -
Cpe08g00370 226 PANTHER GLUTATHIONE S-TRANSFERASE 1 220 - -
Cpe08g00370 226 SUPERFAMILY GST C-terminal domain-like 75 220 IPR036282 -
Cpe08g00370 226 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Cpe08g00370 226 Pfam Glutathione S-transferase, N-terminal domain 3 75 IPR004045 -
Cpe08g00370 226 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 220 IPR045073 -
Cpe08g00370 226 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 215 IPR010987 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00370 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207387 360.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01560 Cpe08g00370 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01558 Cpe-Chr3:12093760 Cpe08g00370 Cpe-Chr8:2308785 1.64E-72 dispersed
Cpe03g01559 Cpe-Chr3:12095366 Cpe08g00370 Cpe-Chr8:2308785 7.69E-106 dispersed
Cpe03g01560 Cpe-Chr3:12097087 Cpe08g00370 Cpe-Chr8:2308785 3.66E-95 dispersed
Cpe03g01562 Cpe-Chr3:12105172 Cpe08g00370 Cpe-Chr8:2308785 1.49E-07 dispersed
Cpe08g00370 Cpe-Chr8:2308785 Cpe10g00926 Cpe-Chr10:5174956 4.62E-54 dispersed
Cpe08g00486 Cpe-Chr8:3114572 Cpe08g00370 Cpe-Chr8:2308785 3.48E-11 dispersed
Cpe19g00327 Cpe-Chr19:2839956 Cpe08g00370 Cpe-Chr8:2308785 2.26E-55 dispersed
Cpe08g00369 Cpe-Chr8:2306686 Cpe08g00370 Cpe-Chr8:2308785 2.95E-103 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g826 . . . . . . . . . . . Cma14g01862 . . . Cpe08g00370 Cpe03g01560 Bhi01g00028 . . . . . . . . . . . . . . . . . Lsi05g01794 . . Cme06g00428 . . . . . . . . . Cmo06g01285 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00370 Cpe_Chr08 FPKM 5.570173 6.822692 7.249365 7.280213 7.309265 6.530908 7.782801 7.220025 5.593028 5.809463