Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00382 ATGGCAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGAAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATCGAGCAACCGAGATATTGCGGAGCTCAAGCAATGCATCAATGGCAGAGAGGTTGGAGGACGTCGAGGCTCTAGGTAATAAGCATGCCGTGGACAACCCTGAAGAGGTCGCTGCTGCGGTTGACATGAGCATACGCAATGCCACTGCAAGGAGGGAGCTTGGATTCTTCTCGTGTGGAACCGGCAATCCTATTGATGATTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTTGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGTGGTCGCGACGGTCGATACTACGTCGTCACTGATTCCGGCAACGACGACCCTGTCAGTCCAAGGCCTGGCACTTTACGACATGCCGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAACTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGAACCAATGTTCACATTGCTAATGGTGCTTGCATCACCATCCAGTTTGTGACTAATGTTATTGTCCATGGTCTAAATATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGATCATAATTCACTCTCTAACTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCACCAACAATTACTTCACTCACCACAATGAGGTAATGTTATTGGGACATAGTGATTCATACGTTAGGGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGAGCATACGCAATGCCACTGCAAGGAGGGAGCTTGGATTCTTCTCGTGTGGAACCGGCAATCCTATTGATGATTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTTGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGTGGTCGCGACGGTCGATACTACGTCGTCACTGATTCCGGCAACGACGACCCTGTCAGTCCAAGGCCTGGCACTTTACGACATGCCGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAACTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGAACCAATGTTCACATTGCTAATGGTGCTTGCATCACCATCCAGTTTGTGACTAATGTTATTGTCCATGGTCTAAATATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGATCATAATTCACTCTCTAACTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCACCAACAATTACTTCACTCACCACAATGAGGTAATGTTATTGGGACATAGTGATTCATACGTTAGGGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACATGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGGGGTAGTGCAAATCCTACTATCAATAGCCAGGGTAACAGATATGCTGCACCAACCAACCCTTTTGCAAAAGAGGTTACCAAGAGGGTTGAGACAGCTGAATCTGAGTGGAAAAACTGGAATTGGAGATCAGAGGGAGACCTATTGATGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCTAGTTTGGGAGCTAAATCTTCATCCATGGTTGCTTCCATAACAGCCAACGCCGGTGCACTTAACTGCCGACGAGGTCACGCCTGCTAG 2091 47.11 MAMAESGGWIRLFLLVVFMLFVETIARVPKEIPEIENRATEILRSSSNASMAERLEDVEALGNKHAVDNPEEVAAAVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRYYVVTDSGNDDPVSPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRYYVVTDSGNDDPVSPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKNWNWRSEGDLLMNGAFFTPSGAGASASYARASSLGAKSSSMVASITANAGALNCRRGHAC 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2377087 2383037 - Cp4.1LG08g02980.1 Cpe08g00382 473348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00382 696 PANTHER PECTATE LYASE 332 693 - -
Cpe08g00382 696 SMART amb_all 173 348 IPR002022 -
Cpe08g00382 696 SMART amb_all 422 619 IPR002022 -
Cpe08g00382 696 PANTHER PECTATE LYASE 18-RELATED 332 693 IPR045032 GO:0030570
Cpe08g00382 696 SUPERFAMILY Pectin lyase-like 333 691 IPR011050 -
Cpe08g00382 696 SMART pbh1 503 534 IPR006626 -
Cpe08g00382 696 SMART pbh1 459 502 IPR006626 -
Cpe08g00382 696 SMART pbh1 254 285 IPR006626 -
Cpe08g00382 696 SMART pbh1 210 253 IPR006626 -
Cpe08g00382 696 SUPERFAMILY Pectin lyase-like 73 330 IPR011050 -
Cpe08g00382 696 PRINTS Pollen allergen Amb family signature 574 593 IPR018082 -
Cpe08g00382 696 PRINTS Pollen allergen Amb family signature 667 690 IPR018082 -
Cpe08g00382 696 PRINTS Pollen allergen Amb family signature 494 515 IPR018082 -
Cpe08g00382 696 PRINTS Pollen allergen Amb family signature 638 662 IPR018082 -
Cpe08g00382 696 PRINTS Pollen allergen Amb family signature 596 615 IPR018082 -
Cpe08g00382 696 PRINTS Pollen allergen Amb family signature 430 446 IPR018082 -
Cpe08g00382 696 PRINTS Pollen allergen Amb family signature 370 387 IPR018082 -
Cpe08g00382 696 PRINTS Pollen allergen Amb family signature 394 419 IPR018082 -
Cpe08g00382 696 Pfam Pectate lyase 433 611 IPR002022 -
Cpe08g00382 696 Pfam Pectate lyase 184 328 IPR002022 -
Cpe08g00382 696 Gene3D - 347 689 IPR012334 -
Cpe08g00382 696 Gene3D - 98 337 IPR012334 -
Cpe08g00382 696 PANTHER PECTATE LYASE 13 329 - -
Cpe08g00382 696 PANTHER PECTATE LYASE 18-RELATED 13 329 IPR045032 GO:0030570
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00382 Cpe17g00243 CCT
Cpe08g00382 Cpe12g00102 CCT
Cpe08g00382 Cpe17g00243 ECH
Cpe08g00382 Cpe12g00102 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00382 Cpe-Chr8:2377087 Cpe19g00431 Cpe-Chr19:3875886 0 dispersed
Cpe09g01067 Cpe-Chr9:9286487 Cpe08g00382 Cpe-Chr8:2377087 1.20E-105 dispersed
Cpe12g00102 Cpe-Chr12:619595 Cpe08g00382 Cpe-Chr8:2377087 0 wgd
Cpe15g00122 Cpe-Chr15:968547 Cpe08g00382 Cpe-Chr8:2377087 3.14E-160 wgd
Cpe17g00243 Cpe-Chr17:1588320 Cpe08g00382 Cpe-Chr8:2377087 0 wgd
Cpe03g01570 Cpe-Chr3:12149997 Cpe08g00382 Cpe-Chr8:2377087 3.12E-30 wgd
Cpe05g00107 Cpe-Chr5:547453 Cpe08g00382 Cpe-Chr8:2377087 6.57E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00382 K01728 - csv:101218188 735.332