Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g00382 | ATGGCAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGAAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATCGAGCAACCGAGATATTGCGGAGCTCAAGCAATGCATCAATGGCAGAGAGGTTGGAGGACGTCGAGGCTCTAGGTAATAAGCATGCCGTGGACAACCCTGAAGAGGTCGCTGCTGCGGTTGACATGAGCATACGCAATGCCACTGCAAGGAGGGAGCTTGGATTCTTCTCGTGTGGAACCGGCAATCCTATTGATGATTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTTGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGTGGTCGCGACGGTCGATACTACGTCGTCACTGATTCCGGCAACGACGACCCTGTCAGTCCAAGGCCTGGCACTTTACGACATGCCGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAACTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGAACCAATGTTCACATTGCTAATGGTGCTTGCATCACCATCCAGTTTGTGACTAATGTTATTGTCCATGGTCTAAATATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGATCATAATTCACTCTCTAACTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCACCAACAATTACTTCACTCACCACAATGAGGTAATGTTATTGGGACATAGTGATTCATACGTTAGGGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGAGCATACGCAATGCCACTGCAAGGAGGGAGCTTGGATTCTTCTCGTGTGGAACCGGCAATCCTATTGATGATTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTTGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGTGGTCGCGACGGTCGATACTACGTCGTCACTGATTCCGGCAACGACGACCCTGTCAGTCCAAGGCCTGGCACTTTACGACATGCCGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAACTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGAACCAATGTTCACATTGCTAATGGTGCTTGCATCACCATCCAGTTTGTGACTAATGTTATTGTCCATGGTCTAAATATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGATCATAATTCACTCTCTAACTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCACCAACAATTACTTCACTCACCACAATGAGGTAATGTTATTGGGACATAGTGATTCATACGTTAGGGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACATGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGGGGTAGTGCAAATCCTACTATCAATAGCCAGGGTAACAGATATGCTGCACCAACCAACCCTTTTGCAAAAGAGGTTACCAAGAGGGTTGAGACAGCTGAATCTGAGTGGAAAAACTGGAATTGGAGATCAGAGGGAGACCTATTGATGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCTAGTTTGGGAGCTAAATCTTCATCCATGGTTGCTTCCATAACAGCCAACGCCGGTGCACTTAACTGCCGACGAGGTCACGCCTGCTAG | 2091 | 47.11 | MAMAESGGWIRLFLLVVFMLFVETIARVPKEIPEIENRATEILRSSSNASMAERLEDVEALGNKHAVDNPEEVAAAVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRYYVVTDSGNDDPVSPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRYYVVTDSGNDDPVSPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKNWNWRSEGDLLMNGAFFTPSGAGASASYARASSLGAKSSSMVASITANAGALNCRRGHAC | 696 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2377087 | 2383037 | - | Cp4.1LG08g02980.1 | Cpe08g00382 | 473348 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g00382 | 696 | PANTHER | PECTATE LYASE | 332 | 693 | - | - | |
Cpe08g00382 | 696 | SMART | amb_all | 173 | 348 | IPR002022 | - | |
Cpe08g00382 | 696 | SMART | amb_all | 422 | 619 | IPR002022 | - | |
Cpe08g00382 | 696 | PANTHER | PECTATE LYASE 18-RELATED | 332 | 693 | IPR045032 | GO:0030570 | |
Cpe08g00382 | 696 | SUPERFAMILY | Pectin lyase-like | 333 | 691 | IPR011050 | - | |
Cpe08g00382 | 696 | SMART | pbh1 | 503 | 534 | IPR006626 | - | |
Cpe08g00382 | 696 | SMART | pbh1 | 459 | 502 | IPR006626 | - | |
Cpe08g00382 | 696 | SMART | pbh1 | 254 | 285 | IPR006626 | - | |
Cpe08g00382 | 696 | SMART | pbh1 | 210 | 253 | IPR006626 | - | |
Cpe08g00382 | 696 | SUPERFAMILY | Pectin lyase-like | 73 | 330 | IPR011050 | - | |
Cpe08g00382 | 696 | PRINTS | Pollen allergen Amb family signature | 574 | 593 | IPR018082 | - | |
Cpe08g00382 | 696 | PRINTS | Pollen allergen Amb family signature | 667 | 690 | IPR018082 | - | |
Cpe08g00382 | 696 | PRINTS | Pollen allergen Amb family signature | 494 | 515 | IPR018082 | - | |
Cpe08g00382 | 696 | PRINTS | Pollen allergen Amb family signature | 638 | 662 | IPR018082 | - | |
Cpe08g00382 | 696 | PRINTS | Pollen allergen Amb family signature | 596 | 615 | IPR018082 | - | |
Cpe08g00382 | 696 | PRINTS | Pollen allergen Amb family signature | 430 | 446 | IPR018082 | - | |
Cpe08g00382 | 696 | PRINTS | Pollen allergen Amb family signature | 370 | 387 | IPR018082 | - | |
Cpe08g00382 | 696 | PRINTS | Pollen allergen Amb family signature | 394 | 419 | IPR018082 | - | |
Cpe08g00382 | 696 | Pfam | Pectate lyase | 433 | 611 | IPR002022 | - | |
Cpe08g00382 | 696 | Pfam | Pectate lyase | 184 | 328 | IPR002022 | - | |
Cpe08g00382 | 696 | Gene3D | - | 347 | 689 | IPR012334 | - | |
Cpe08g00382 | 696 | Gene3D | - | 98 | 337 | IPR012334 | - | |
Cpe08g00382 | 696 | PANTHER | PECTATE LYASE | 13 | 329 | - | - | |
Cpe08g00382 | 696 | PANTHER | PECTATE LYASE 18-RELATED | 13 | 329 | IPR045032 | GO:0030570 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe08g00382 | Cpe17g00243 | CCT | |
Cpe08g00382 | Cpe12g00102 | CCT | |
Cpe08g00382 | Cpe17g00243 | ECH | |
Cpe08g00382 | Cpe12g00102 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00382 | Cpe-Chr8:2377087 | Cpe19g00431 | Cpe-Chr19:3875886 | 0 | dispersed | |
Cpe09g01067 | Cpe-Chr9:9286487 | Cpe08g00382 | Cpe-Chr8:2377087 | 1.20E-105 | dispersed | |
Cpe12g00102 | Cpe-Chr12:619595 | Cpe08g00382 | Cpe-Chr8:2377087 | 0 | wgd | |
Cpe15g00122 | Cpe-Chr15:968547 | Cpe08g00382 | Cpe-Chr8:2377087 | 3.14E-160 | wgd | |
Cpe17g00243 | Cpe-Chr17:1588320 | Cpe08g00382 | Cpe-Chr8:2377087 | 0 | wgd | |
Cpe03g01570 | Cpe-Chr3:12149997 | Cpe08g00382 | Cpe-Chr8:2377087 | 3.12E-30 | wgd | |
Cpe05g00107 | Cpe-Chr5:547453 | Cpe08g00382 | Cpe-Chr8:2377087 | 6.57E-176 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g00382 | K01728 | - | csv:101218188 | 735.332 |