Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00383 ATGATTTTTGAGGTCATGGCTAGGAAAGTACATGACACTTTAAGCCAACAATTATACATGGAACGACCAAGAGTTGTTACGGATGTCCGAATTACTGCAGATCATGGTGTGAGTGATGTTTGTGTACAGACGGGTGAGGTATTTTCTCCCCAGTTTGTGCGAGATCGAGCTGCTTTAAGAAGGTTGTCGGATGTGAGTGATGGAGATCAACAACAGCAGCCGCAAAAGAGAACAGGTCTTGCTTTAAATCCGAGCAGCCAACTCGTATATGAGGATCTCAGTGGAATTCTTGGACTCAAGAGGATGAATTCTGAAAGCAGTTCAGAATTATCATCAATGCCCGCGAATGCTTATGCATTTGAAAGGGATAACAAGGTTTATCCTAACAACACAAGCAAATATCAGCGGGAATATAGTGCTACTGGACAAGCATCTGCTGAAAGGGATAACAAGGTTTATCCTAACAACACAAGCAAATATCAGTGGGAATATAGTGCTACTGGACAAGCATCTGGTGCATATGCTGATGAAATTAACCGAGGAGTTCAATTTGACCCCTCAACACTGGCCTTGTATGCAATGGAATCACCTCATTCATGTTATCCTTGTGGGGCTGGATTGGGAGATTTCCCTGTCACTGGCAAGATGAAATTTCTCTGTAGTTTTGGAGGTAGAATATTACCAAGGCCTAATGATGGGAAGCTTAGATATGTAGGTGGAGAAACACGCATTATATCCATTAGGAAAAACATCTCGTGTGAACAACTTATCAGAAAGACATACGCTGTCTGTAAGTATGTCCACACTATAAAGTACCAGCTTCCTGGTGAAGATCTCGATTCACTTATCTCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAATATCATGAGCTGGAAAACGCAGGGAGTTCTCAAAGACTCAGAATAATTCTTGTTTCTACAAATGATTGTTGTGAGAGTCCTACTTCTATTGAAGGAAGGGTGGTTCAACCAATTGATGTTGATTATCAATATGTTGCGGCTGTAAATGGTATGCTAGACCCAAGTCTTCAAAGGAGCTCTAGTGGACAGAGTTTCACAAGCCAGACTAGCCAGGTGGGAACCATATCAGATCCTAGTCCCAATTTTTGTACTGTTTCTTCACATGCTACAGACTTAAAAGATGCCAATTCACCTATACCAAATTTGGCAGGAATGTTTCCTAGACCTGGTGGTCAATTGTTAATACCCATTCAAATCCCACGCAAGTCATTTAATCAAACACCTTTATTTTCTCCGGTTACAGTAATGCAAAAAGATTTTAAGAACGTGGATCCAACATACGCAGAAGATGCTAGAAACTTCACTCCATTTGTTGCAGAAAAACGTCCATGTGATACGGTTTATTATGGTGATGCAATGGGCCGTCACAATAACCTTTACCATGGTTCTCCGCTGATGAATTATCATCATGAAAAATCTACAGTGGAAACTGATGAGAAATACAAAGTTCATGATGTTCATTTCCCACAAAGCTCCAGCGAAGATTTTGTGCCTGCAACTTACTGGGATCAAAGTGATACACATTCAATCAAAACTCTGCTAAAGGAACGGGCAGTTAATTATGAACAGCTATACTCGGATGCCGAATATTTGATGCAGTTAAGATCTGGAACCACCCACATGAGACAAACAATGATGCATTCACATTCTGAGCCCCTACTAAAGGAACAGGATCAAAAGTTGAAACATGGAGGAGCCTATCCACTGAACTCATTCAATGATAGTGATCAATTATATTCAATGGCAATGTCAAGTTCCTTTCAGGATTTCCAAACGATATGGAAACAGAGAGTTGGCGGGGAATTTCAAGATGCCAAGTATGAGAAACATGGAAAGTTGGCGTCTGGTAGTGAGAATGAAGGATACGAAGAATGCAATTTTGCTGAAAAAAAGGTTAATTTCAATGGAAGTATTTATGTCCCATCACTTAATGGTGATGAAAAATACAAATACTTGCAACATGTTGACTACCAACAAAATGGTTACCCCCCGCTAGAGGTACGAAGCCTTGGAGGTAGAACTTCTGCAGAACGAGGGTTTGAATTAGAAAAATCTGCAGATGTCGTGGATGGCCCCTCCCTCATTTACCGTTTAGAAACAACTGCTCCAAAAGTTTTCGAGGAGAGCCAATATTCTGTCGAGGATCAACGGACCACTTCTGATATAGTAAGGAGCCAACCATTTTCTTGCGCATCTTCTGATCTACTACCTCTTACAACTCAAGCTTTGTGCGACAGAAAGATCATAAATCAGGAACCAACATGGGATAGTTCTGCTTTAGGTAGAGATGTTTCTCTAGGCGATGAGAACTTCGTAACCTGTAATTACCGTAAGGTTGCAGACCATAGTAGAAAAAAGAGCAATCTGGATGATTCTCTGTTTATCAAATCATCAAATTCAGATGATTTTCATAGCAATGAGGACGTGGGATTAGCAGTAATAGTTGAAGATGTAACTCATAGTATACCTCCCGACATACCCTTAGCTTCTGGAGTTATCCCACGGGTTGAAAATGAGGCCAGTGATGACTCTCCATCTTCAAGAGGACATGATGCTCATATTCCTAGTACAGAAACTGACCATGAGGATGCAGACAGTATTCTTAGTTCTAGGGATGAATCAATGAGCGAGGCAGCAATAGCTGAAATTGAAGCCGGCATCTATGGCCTGCAGATCATAAAGAATGAAGATCTTGAAGAACTGCAAGAATTAGGATCTGGGACGTTTGGCACAGTTTTTCATGGAAAATGGAGGGGAACGGATGTTGCTATTAAGAGAATAAAAAAGAGTTGCTTCTCAGGAAGTTTTTCTGAGCAAGAAAGACTGACTAGAGATTTCTGGAGAGAAGCAAGGATTCTATCGACTCTTCACCATCCGAACGTGTTGGCTTTTTATGGAGTGGTTCCTGATGGACCTGATGGAACGTTGGCAACTGTAACGGAGTATATGGTAAACGGGTCATTAAGGCATGTTCTTTTAAGAAAGGATAGAGTGCTTGATCGTCGGAAAAGGCTTATGATTGCAATGGATGCAGCTTTTGGCATGGAATATTTGCATATGAAAAACATTGTTCATTTTGATCTGAAGTGTGATAATTTGTTGGTCAACTTGAGGGATCCTGAACGACCCATATGCAAGGTTGGAGATTTTGGGTTGTCGAGAATTAAGCGCAACACACTTGTTTCTGGAGGTGTGCGTGGAACTCTTCCATGGATGGCACCAGAATTGTTAGATAGTGGCAGTTCTAAGGTCTCTGAGATGGTTGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACTGGCGAGGAGCCATATGCCAACATGCATTGTGGTGCCATCATTGGTGGAATTGTAAGTAATACTCTTAGACCACCAATCCCAAAACGCTGCGATACTGAATGGAAAAAGCTAATGGAAGATTGTTGGTCACCTGAACCTGCAGCGAGGCCATCGTTCACCGAGATAACGAATAGACTTCGCAGCATGTCGGTAGCACTCCAGATCAGAAAGAGGCCAACTGTAGGTAGTAGATGA 3591 41.46 MIFEVMARKVHDTLSQQLYMERPRVVTDVRITADHGVSDVCVQTGEVFSPQFVRDRAALRRLSDVSDGDQQQQPQKRTGLALNPSSQLVYEDLSGILGLKRMNSESSSELSSMPANAYAFERDNKVYPNNTSKYQREYSATGQASAERDNKVYPNNTSKYQWEYSATGQASGAYADEINRGVQFDPSTLALYAMESPHSCYPCGAGLGDFPVTGKMKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNISCEQLIRKTYAVCKYVHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYHELENAGSSQRLRIILVSTNDCCESPTSIEGRVVQPIDVDYQYVAAVNGMLDPSLQRSSSGQSFTSQTSQVGTISDPSPNFCTVSSHATDLKDANSPIPNLAGMFPRPGGQLLIPIQIPRKSFNQTPLFSPVTVMQKDFKNVDPTYAEDARNFTPFVAEKRPCDTVYYGDAMGRHNNLYHGSPLMNYHHEKSTVETDEKYKVHDVHFPQSSSEDFVPATYWDQSDTHSIKTLLKERAVNYEQLYSDAEYLMQLRSGTTHMRQTMMHSHSEPLLKEQDQKLKHGGAYPLNSFNDSDQLYSMAMSSSFQDFQTIWKQRVGGEFQDAKYEKHGKLASGSENEGYEECNFAEKKVNFNGSIYVPSLNGDEKYKYLQHVDYQQNGYPPLEVRSLGGRTSAERGFELEKSADVVDGPSLIYRLETTAPKVFEESQYSVEDQRTTSDIVRSQPFSCASSDLLPLTTQALCDRKIINQEPTWDSSALGRDVSLGDENFVTCNYRKVADHSRKKSNLDDSLFIKSSNSDDFHSNEDVGLAVIVEDVTHSIPPDIPLASGVIPRVENEASDDSPSSRGHDAHIPSTETDHEDADSILSSRDESMSEAAIAEIEAGIYGLQIIKNEDLEELQELGSGTFGTVFHGKWRGTDVAIKRIKKSCFSGSFSEQERLTRDFWREARILSTLHHPNVLAFYGVVPDGPDGTLATVTEYMVNGSLRHVLLRKDRVLDRRKRLMIAMDAAFGMEYLHMKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSGSSKVSEMVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDTEWKKLMEDCWSPEPAARPSFTEITNRLRSMSVALQIRKRPTVGSR 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2396973 2403770 + Cp4.1LG08g02910.1 Cpe08g00383 473349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00383 1196 PANTHER SERINE-THREONINE PROTEIN KINASE 135 574 - -
Cpe08g00383 1196 PANTHER SERINE-THREONINE PROTEIN KINASE 788 1189 - -
Cpe08g00383 1196 Gene3D Transferase(Phosphotransferase) domain 1 1003 1192 - -
Cpe08g00383 1196 CDD PB1_UP2 219 314 - -
Cpe08g00383 1196 PRINTS Tyrosine kinase catalytic domain signature 997 1010 IPR001245 GO:0004672|GO:0006468
Cpe08g00383 1196 PRINTS Tyrosine kinase catalytic domain signature 1105 1127 IPR001245 GO:0004672|GO:0006468
Cpe08g00383 1196 PRINTS Tyrosine kinase catalytic domain signature 1149 1171 IPR001245 GO:0004672|GO:0006468
Cpe08g00383 1196 PRINTS Tyrosine kinase catalytic domain signature 1034 1052 IPR001245 GO:0004672|GO:0006468
Cpe08g00383 1196 SMART serkin_6 915 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00383 1196 ProSitePatterns Protein kinases ATP-binding region signature. 921 946 IPR017441 GO:0005524
Cpe08g00383 1196 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 135 574 - -
Cpe08g00383 1196 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 788 1189 - -
Cpe08g00383 1196 MobiDBLite consensus disorder prediction 858 887 - -
Cpe08g00383 1196 Pfam Protein tyrosine and serine/threonine kinase 917 1178 IPR001245 GO:0004672|GO:0006468
Cpe08g00383 1196 MobiDBLite consensus disorder prediction 843 888 - -
Cpe08g00383 1196 Pfam PB1 domain 231 316 IPR000270 GO:0005515
Cpe08g00383 1196 SUPERFAMILY Protein kinase-like (PK-like) 904 1177 IPR011009 -
Cpe08g00383 1196 ProSiteProfiles Protein kinase domain profile. 915 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00383 1196 CDD STKc_MAP3K-like 921 1178 - -
Cpe08g00383 1196 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1040 1052 IPR008271 GO:0004672|GO:0006468
Cpe08g00383 1196 SMART PB1_new 230 317 IPR000270 GO:0005515
Cpe08g00383 1196 Gene3D - 234 318 - -
Cpe08g00383 1196 SUPERFAMILY CAD & PB1 domains 231 319 - -
Cpe08g00383 1196 Gene3D Phosphorylase Kinase; domain 1 908 1002 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00383 - - - cmax:111473634 2261.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01573 Cpe08g00383 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00841 Cpe-Chr7:7623623 Cpe08g00383 Cpe-Chr8:2396973 1.87E-24 dispersed
Cpe08g00383 Cpe-Chr8:2396973 Cpe16g00711 Cpe-Chr16:7264664 2.84E-158 dispersed
Cpe20g00270 Cpe-Chr20:1514288 Cpe08g00383 Cpe-Chr8:2396973 1.57E-35 dispersed
Cpe03g01573 Cpe-Chr3:12171462 Cpe08g00383 Cpe-Chr8:2396973 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62545 PF07714 PK_Tyr_Ser-Thr 1.90E-61 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00383 Cpe_Chr08 FPKM 33.353317 32.067322 39.525288 37.056786 33.646946 33.760094 31.115553 71.786873 70.105591 71.865875