Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00395 ATGGGCAAGTACATCAAGAAATCCAAATCCTCACGGGAAATCACCCTCATCGACGCCTCTCAATCTTCCTCCTACATTGGCGTTCGAACTCGTGCCAAAACCCTAGCTCTTCAGCGCCTTCAGAAGGTTTCAAATTCTCCCTCGCCGTCGTCGTCTCCGGCCACCTCTGGCTCTTATCTCCAACTCCGTAGTCGTCGGCTGCAAAAACCGATGAGTATTGCTGTTGCGAATGAGTCCAGGAAGCAGAAATTGACGCAGAGGAGTGCTGATGCTCGCGGCCGGAGAGTTAATGTAGATTCCAGAGGTTCCTCGAGGTTGGGGGTTTGTTCTGTCGCTGCTGGTTCTATTGAGTCCGTCTCGCGTCGGCGCGTTGACGGCGATGTGAAAGAAGCGGCGGCGGCGGCGGTGGTTGAAGAAATTGTGGTTAAGAAGAGTGAGGTTCAGGAAAATGTGAATATTCTCGATGTTGGTGCTCAGGAAGACGCTTCGTTTGGAGAAAATAATTTGGAATTTGAAGGTAGAACGAGTAGGGAATCCACTCCTTGTAGTTTGATAAGGAAGGCCGACAGCATACGAACGCCGAGCTCTTCTACAAAGGTGTCAAGTACCACTGATGATAGGATACAGCTGCAGAACTCCTCTGCAACAGATGTTCCAACTGCTCAGGAAGTTGACGATTTCTTCAACTGGGCCGAAGGAGAGCAGCAGAGGAAATTCATTGAGAAGTATAACTACGACCTGGTCACAGACAAGCCACTTCCCGGTCGTTACGAATGGGAGAAATTGGACGATTAG 795 50.06 MGKYIKKSKSSREITLIDASQSSSYIGVRTRAKTLALQRLQKVSNSPSPSSSPATSGSYLQLRSRRLQKPMSIAVANESRKQKLTQRSADARGRRVNVDSRGSSRLGVCSVAAGSIESVSRRRVDGDVKEAAAAAVVEEIVVKKSEVQENVNILDVGAQEDASFGENNLEFEGRTSRESTPCSLIRKADSIRTPSSSTKVSSTTDDRIQLQNSSATDVPTAQEVDDFFNWAEGEQQRKFIEKYNYDLVTDKPLPGRYEWEKLDD 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2503821 2508263 + Cp4.1LG08g02740.1 Cpe08g00395 473361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00395 264 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4 1 263 - -
Cpe08g00395 264 Gene3D p27 211 264 IPR044898 -
Cpe08g00395 264 MobiDBLite consensus disorder prediction 40 62 - -
Cpe08g00395 264 PIRSF CKI_KRP_plant 1 123 IPR044275 GO:0004861|GO:0045736|GO:0051726
Cpe08g00395 264 PIRSF CKI_KRP_plant 108 264 IPR044275 GO:0004861|GO:0045736|GO:0051726
Cpe08g00395 264 MobiDBLite consensus disorder prediction 77 98 - -
Cpe08g00395 264 Pfam Cyclin-dependent kinase inhibitor 219 262 IPR003175 GO:0004861|GO:0005634|GO:0051726
Cpe08g00395 264 MobiDBLite consensus disorder prediction 83 98 - -
Cpe08g00395 264 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 1 263 IPR044275 GO:0004861|GO:0045736|GO:0051726
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00395 - - - cmax:111473647 462.611
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00395 Cpe17g00248 CCT
Cpe08g00395 Cpe12g00096 CCT
Cpe03g01588 Cpe08g00395 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01590 Cpe-Chr3:12271478 Cpe08g00395 Cpe-Chr8:2503821 5.56E-41 dispersed
Cpe08g00395 Cpe-Chr8:2503821 Cpe17g00988 Cpe-Chr17:7504899 1.67E-07 dispersed
Cpe12g00096 Cpe-Chr12:574549 Cpe08g00395 Cpe-Chr8:2503821 1.37E-49 wgd
Cpe15g00140 Cpe-Chr15:1106200 Cpe08g00395 Cpe-Chr8:2503821 1.18E-12 wgd
Cpe17g00248 Cpe-Chr17:1635834 Cpe08g00395 Cpe-Chr8:2503821 1.58E-42 wgd
Cpe03g01588 Cpe-Chr3:12266689 Cpe08g00395 Cpe-Chr8:2503821 3.85E-119 wgd
Cpe05g00117 Cpe-Chr5:614339 Cpe08g00395 Cpe-Chr8:2503821 4.87E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g892 Blo01g00325 Blo12g00119 . Bda08g00030 Bpe04g01065 Bpe14g00840 Bma04g01049 . Cmo08g01001 . Cma06g01246 Cma14g01889 Car06g01072 Car14g01691 Sed02g1489 Cpe08g00395 Cpe03g01588 Bhi01g00243 Tan10g0528 Cmetu06g1184 Lac12g2058 Hepe05g1754 . Lcy11g1768 . . . . . . . . . Cone7ag0385 . Lsi05g01832 Csa02g00930 . Cme06g00388 . . . Bda13g00492 Bpe05g01135 . Bma02g01208 . . Cmo06g01258 Cmo14g01940 Cma08g01029 Cma17g00108 . . Cpe12g00096 Cpe17g00248 . . . . . . . Cla05g00354 Cam05g0385 Cec05g0389 Cco05g0389 Clacu05g0380 Cmu05g0364 Cre05g0428 . Csa03g01103 Chy06g00374 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009326 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 3 1 1 1 1 1 1 1 1 4 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00395 Cpe_Chr08 FPKM 0.820339 0.414072 1.751638 2.039159 0.0 0.0 0.591579 1.221567 2.153976 0.0