Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00396 ATGGGTAGCGGAGAAAAGGTCTTCACCTTGAAGGAAGTCGCTGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGACGTGACCAAATTCTTAGACGACCATCCTGGAGGTGATGATGTTTTGTTATCAGCCACAGGAAAAGATGCAACGGACGATTTTGAAGATGTGGGGCACAGTGACAACGCAAGAGAAATGATGGATCAATACTATGTTGGAGAGATTGATGGTTCGACAATTCCAAAGAAGGTCGCATACACGCCTCCGAAACAGCCTCATTACAATCAGGACAAGACGTCGGAGTTCATCATCAAGCTCCTCCAGTTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTTGCCTTACGTTTCTACACGAAACAAGCTTGA 405 46.42 MGSGEKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLDDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDGSTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVALRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2509521 2512818 - Cp4.1LG08g02720.1 Cpe08g00396 473362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00396 134 Gene3D - 3 84 IPR036400 -
Cpe08g00396 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 91 IPR036400 -
Cpe08g00396 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Cpe08g00396 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cpe08g00396 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cpe08g00396 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cpe08g00396 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cpe08g00396 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cpe08g00396 134 SMART Cyt_b5_2 8 81 IPR001199 -
Cpe08g00396 134 PANTHER CYTOCHROME B5 1 132 - -
Cpe08g00396 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Cpe08g00396 134 PANTHER CYTOCHROME B5 1 132 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01806 Cpe-Chr3:13533592 Cpe08g00396 Cpe-Chr8:2509521 4.07E-47 dispersed
Cpe05g00584 Cpe-Chr5:3539455 Cpe08g00396 Cpe-Chr8:2509521 5.76E-68 dispersed
Cpe08g00396 Cpe-Chr8:2509521 Cpe15g00137 Cpe-Chr15:1084099 8.26E-65 dispersed
Cpe11g00394 Cpe-Chr11:2169898 Cpe08g00396 Cpe-Chr8:2509521 3.87E-34 transposed
Cpe12g00095 Cpe-Chr12:569324 Cpe08g00396 Cpe-Chr8:2509521 7.17E-72 wgd
Cpe03g01589 Cpe-Chr3:12270252 Cpe08g00396 Cpe-Chr8:2509521 1.87E-89 wgd
Cpe05g00119 Cpe-Chr5:621104 Cpe08g00396 Cpe-Chr8:2509521 1.10E-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00396 K23490 - csv:101214209 273.092