Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00397 ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCGGCCATTTCGGCGCTGCCGATTGACGCCGGCGGTCACGGCAAGTTTCAGGGTTCTCTTGATGGAACGAATCTTCCCGGCGATGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCATGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCGAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACGCTTTATCACTTAAAATCGCACCTCCAGAAATATCGACTCGGGAAGCAATCGTTCAAGGAATCGACCGAGAATTCAAAGGACGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCGTCGTTGTCGCCATCGTCGAGATTAATGACACAGGATCTTAACGACGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAGACGATACTCGACCGAGCTTGTCAAGCATTAAGCGATCNTACTCTTCCTCAACATAACAAAATCCGTTTTCAACTCCGTGCCATTACCGTTNTGCTCTTCCACAACATAACAAAATCCGTTTTCAACTCCGTGCCATTACCGTTAAAACAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAGACGATACTCGACCGAGCTTGTCAAGCATTAAGCGATCAGACTGCAGCCTCTGCAGGACTCGAAGCTGCCAGAGAAGAGCTCTCCGAACTTGCAATCAAAGTCTCGAATGACTCGAAAGAGATGGCACCATTGGAGTCACAAAAAGTGCTTCCCTTCTCGGAACTCGCTGCTGCTCTAGAAAACCGAAAAGCTCCTACCGTTATGGCTCGAATAGGCGATTGCTCGATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCCCCTATCGGAGTAGGATCAACTGTCACCGCAATGAAGAGACCGAGACCAGCTTTCAGTCATGGAGATTCGATGGTGCTCGAGGGCAATGCTCGGCACGAGGTCGAATGGATGATGAGTAATATTGGATGA 1152 50.17 MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSLSPSSRLMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQTILDRACQALSDXTLPQHNKIRFQLRAITVXLFHNITKSVFNSVPLPLKQVQRHLQLRIEAQGKYLQTILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFSELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMVLEGNARHEVEWMMSNIG 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2528331 2533573 + Cp4.1LG08g02780.1 Cpe08g00397 473363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00397 383 PANTHER PROTEIN PHR1-LIKE 2 12 202 - -
Cpe08g00397 383 MobiDBLite consensus disorder prediction 115 140 - -
Cpe08g00397 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 236 380 IPR044848 GO:0003700
Cpe08g00397 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 108 IPR017930 -
Cpe08g00397 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 202 IPR044848 GO:0003700
Cpe08g00397 383 MobiDBLite consensus disorder prediction 114 140 - -
Cpe08g00397 383 Pfam MYB-CC type transfactor, LHEQLE motif 149 194 IPR025756 -
Cpe08g00397 383 Pfam MYB-CC type transfactor, LHEQLE motif 237 261 IPR025756 -
Cpe08g00397 383 SUPERFAMILY Homeodomain-like 51 108 IPR009057 -
Cpe08g00397 383 Coils Coil 273 293 - -
Cpe08g00397 383 Pfam Myb-like DNA-binding domain 54 104 IPR001005 -
Cpe08g00397 383 Gene3D - 50 109 - -
Cpe08g00397 383 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677
Cpe08g00397 383 PANTHER PROTEIN PHR1-LIKE 2 236 380 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01593 Cpe08g00397 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00146 Cpe-Chr5:764259 Cpe08g00397 Cpe-Chr8:2528331 6.02E-53 dispersed
Cpe08g00397 Cpe-Chr8:2528331 Cpe15g00910 Cpe-Chr15:8713480 8.85E-09 dispersed
Cpe16g00703 Cpe-Chr16:7223288 Cpe08g00397 Cpe-Chr8:2528331 1.30E-18 dispersed
Cpe03g01593 Cpe-Chr3:12298519 Cpe08g00397 Cpe-Chr8:2528331 1.02E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49843 PF00249 Myb_DNA-binding 2.50E-07 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00397 - - cmax:111473855 381.333