Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00399 ATGAATCGTAAGGTATTCGATTTTCTGAATTTCTACCGGCGAAAACGGAGTTTTGTTCTTTATTCTGAAATGGCTTGTGAAGCTATACAACAGTGGACATTTAATGGATTAGTGGCTGCATTTCTTGATCTCGGTATAGCTTATCTTGTATTATGTGCATCAAGTCTTGTTTTCTTTACTTCCAAATTTCTTGCACTGTTTGGATTATGTCTGCCTTGTCCTTGTGATGGCCTATTTGGTAATCTTAGTAGTGATCACTGCTTCCAAAAGATACTAGTGGATCGTTCATCCAAAAAAGTATCTTCTGTCATTCATTCGGCTAGAGAAAAGTTACCATTGAATTCCATGTGGGATCAAGAGCCAAAATGTTGTTTTAAGTCAACGTTGATGCACGAGAGGAATGGCAACAAGGCGCATGTTGAATCAGAAGGCGAACCATCTGATGATTCCTTTTCTAAAACCAGATCACTGCAAGCTATGATTTATGGAGATTTTCACAGTGTAAAAGAATCGCGTTGTAACGGCGATGTGGATCACAAGAAGGTCATGTCAGTGTCTCCAAATGACATTTCACAGTTGGATATGGAAGATCTTTCTCTGTCTCCTTCAAGCTTCAGTGGATTTGGGGATAATAATACTGAGGACGGCTTCTTTTCTGTTGATTCTGGAGATGAAAGAGAGGAGTCTTCATCAGACAACAGCGATCAATGTAAAGTATTTCCCGATGAGAAAATATGGGCGGAGAAGTTCGTAGCGTCTTTTGAAGAGGCAGGGAGCAAATGCAGAGGGGAGCTATGCTTGGATGGTAATGAGAGTGATACAATCAAACTATTGGAACAAGCACTTGAAGAAGAGCAGATGGCTCGTGCAACTCTGTACCTGGAGCTTGAGAAAGAGAGAAGTGCTGCTGCCACTGCTACTGATGAGGCCATGGCTATGATATTACGTCTTCAGGAGGAGAAGGCATCGATAGAAATGGATGCTAGGCAATACCAGAGGATGATAGAGGAGAAAACTGCTTACGATGCTGAGGAAATGAGTATTCTTAAAGAAATTCTAGTGAGGAGAGAGCGGGAAATGCATTTCCTCGAGAAGGAAGTTGAAGCGTTTCAGAAAAGTTTCTTTGAAGATGATGGAGTGGATGTTGATATGCTCGACCCGGAAATTACACCACAAGGGGTCCCTTCTTTCGCCTATTCGAGTAAAGGTCCATCTCATATGCTTCAATGCATTCATAGATCCATTAGAGACAAGCAAGATGCAAATTACACAAAACGTTCTTCACAATATGAGATCCCATCAATTGAGTTGCGGAAGTTAACTTTTGAATTTGAGGACGAGTCGCCATTTATTCACTCGGATGAACATGCTGATGCTGCAGAAGCCGGGGGCATGTTGTTGCACCAAGCCGCTGATAACTTCATGATTAAAGAAGAGAATGACAATGAGTTACAAGAAAAGGGCATGGTGGAAGATGAAAATTTATACATTCTGCAAGGAGAAGTAAATGAACTGGAACCATATCTGCAAAGCAATATGTCAAATGGTCTTGATAAAGTTGAGAAATCCACGGAACTGGAACCGATTGCAGATGAACGAGAAAAAGTCGACGAAGTTTCATATGACGGGTTGGCATCAGCTAAAACAATTATTCCCTGTGTTGAGTACAACTTGGAAAAGAATGGTGACCATCAAAAGCAGCAGCCAAAAGATCTCGACTCTATGACCAATATTGATCCCCAATCTCATGATATTCATGTCATTGATGAAGAAGCTAGCACATGCGACGACGTTAGTGCCGATGCAAGCAAAGAACCGGTGATCAATGGTACCTCGAGTTTTCCAGCTAACTGTTATAGTCCATCCTTCAGCTTGTTGCAGAGTGAACTAGACATCACAAGAAGCAACTCAGATGCCTCCGGTAGATTTCCACCATTTGCTCGTTCTCGAAGCAATTGCTTGCGTTCCGAATTGCGTAGAAATTCAATGTCTGCTGTCGATTATGAAAGGTCTAAAATTGGCGATGAAGTTGAGTCGCTCAGAGAAAGGTTGAAGATTGTTCAGGAGGAAAGAGAAAAACTCAGGTTCTCTTTGGAACACAAAGACAAGGAGAACAATCAGTTACAACTCTTAGAAAGTATAACAAATCACCTTCGTGAAATCCGGCAACTGNTCGTTCAGGAGGAAAGAGAAAAACTCAGGTTCTCTGTGGAACACAAAGAGAAGGAGAACAATCAGTTACAACTTTTAGAAAGTATAACAAATCACCTTCGTGAAATCCGGCAACTGACGGATCCTGGAAAGGCAATTCTGCAGGCTCCATTTCCTCCATCCTCTAAG 2340 41.62 MNRKVFDFLNFYRRKRSFVLYSEMACEAIQQWTFNGLVAAFLDLGIAYLVLCASSLVFFTSKFLALFGLCLPCPCDGLFGNLSSDHCFQKILVDRSSKKVSSVIHSAREKLPLNSMWDQEPKCCFKSTLMHERNGNKAHVESEGEPSDDSFSKTRSLQAMIYGDFHSVKESRCNGDVDHKKVMSVSPNDISQLDMEDLSLSPSSFSGFGDNNTEDGFFSVDSGDEREESSSDNSDQCKVFPDEKIWAEKFVASFEEAGSKCRGELCLDGNESDTIKLLEQALEEEQMARATLYLELEKERSAAATATDEAMAMILRLQEEKASIEMDARQYQRMIEEKTAYDAEEMSILKEILVRREREMHFLEKEVEAFQKSFFEDDGVDVDMLDPEITPQGVPSFAYSSKGPSHMLQCIHRSIRDKQDANYTKRSSQYEIPSIELRKLTFEFEDESPFIHSDEHADAAEAGGMLLHQAADNFMIKEENDNELQEKGMVEDENLYILQGEVNELEPYLQSNMSNGLDKVEKSTELEPIADEREKVDEVSYDGLASAKTIIPCVEYNLEKNGDHQKQQPKDLDSMTNIDPQSHDIHVIDEEASTCDDVSADASKEPVINGTSSFPANCYSPSFSLLQSELDITRSNSDASGRFPPFARSRSNCLRSELRRNSMSAVDYERSKIGDEVESLRERLKIVQEEREKLRFSLEHKDKENNQLQLLESITNHLREIRQLXVQEEREKLRFSVEHKEKENNQLQLLESITNHLREIRQLTDPGKAILQAPFPPSSK 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2538766 2541850 + Cp4.1LG08g02760.1 Cpe08g00399 473365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00399 780 Pfam Zein-binding 278 367 IPR007656 -
Cpe08g00399 780 PANTHER BNAANNG28530D PROTEIN 726 780 - -
Cpe08g00399 780 PANTHER BNAANNG28530D PROTEIN 26 724 - -
Cpe08g00399 780 Coils Coil 314 334 - -
Cpe08g00399 780 PANTHER BNAANNG28530D PROTEIN 26 724 - -
Cpe08g00399 780 Coils Coil 726 731 - -
Cpe08g00399 780 Coils Coil 670 697 - -
Cpe08g00399 780 Coils Coil 711 724 - -
Cpe08g00399 780 Coils Coil 353 373 - -
Cpe08g00399 780 MobiDBLite consensus disorder prediction 201 218 - -
Cpe08g00399 780 MobiDBLite consensus disorder prediction 219 237 - -
Cpe08g00399 780 ProSiteProfiles GTD-binding domain profile. 273 371 IPR007656 -
Cpe08g00399 780 PANTHER BNAANNG28530D PROTEIN 726 780 - -
Cpe08g00399 780 MobiDBLite consensus disorder prediction 201 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00399 - - - mcha:111016085 961.829
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01595 Cpe08g00399 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00399 Cpe-Chr8:2538766 Cpe17g01102 Cpe-Chr17:8365175 4.37E-55 dispersed
Cpe18g00578 Cpe-Chr18:6235340 Cpe08g00399 Cpe-Chr8:2538766 3.95E-17 dispersed
Cpe03g01595 Cpe-Chr3:12306680 Cpe08g00399 Cpe-Chr8:2538766 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g900 . . . . . . . . . . . Cma14g01896 . Car14g01698 Sed02g1501 Cpe08g00399 Cpe03g01595 Bhi01g00229 Tan10g0517 Cmetu06g0717 . Hepe05g1763 . Lcy11g1777 . . . . . . . . . . . Lsi05g01844 . . Cme06g00379 . . . . . . . Bma06g01282 . Cmo06g01251 Cmo14g01948 . . . . . . . . . . . . . . . . . . . . . Csa03g01093 Chy06g00362 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006891 1 2 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 1 1 1 1 0 8 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00399 Cpe_Chr08 FPKM 3.015346 2.769438 8.117034 7.60533 39.743458 38.388077 40.089039 11.972571 12.83666 13.090255