Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00400 ATGGGGAAGAAAGCTAAGAAGAAGAACGGCCGAACTCCTACGAAGGAGAAGCGGGTATCTTCAAGTTCACCGAGGAAGGTGCCCCAGCGAAGCAGCACAACGGTGGAGATTGCTGATGATGATGTTTCAGTTGTTAAGGAGAATAGCCTCTGCGGGCATATTGATAAATGCTTTAATTTGAATGAGTTATCTTCTAAACTTGGGTCCTCTGAACCTATTAGCTGTGAAGATTGTCAAGAAAGTTCAGCTGATAGAAGGGGGAGTAAGGGGAAGGCTAGACATGGGAAGAAGAAGGGTGGAACTTCGGTGGATGGTAAAGCTGATTCCAAAGCAATTTGGATTTGTTTGCAGTGTGGACATTATGCCTGTGGAGGAATTGGACTTCCTACAAACTCTCAGAGTCATGCCGTTCGACATGTCAGGCAAACTCGGCACCCGGTGGTGATTCAGTTCGAAAACCCGCAGCTTCGATGGTGTTTCTCTTGCAATACACTACTTCCAGTAGAGAAAACTGAGGAGAATGGTGAACAAAAAGATGCTTTGAAGAAGATCTTTACAGAAGCAAGAATGGAAGGCAGAATGAAAGGTTCAATAAATCCAAGATCAGTTTTTGGTTGTATCTCTACCAAAGCCCCTCAGTTCAAAGGATACGAGCAACATGATAGTCACGAATTGCTTCGTGTCCTACTTGATGGATTGTCTACTGAAGAGCTGACTTCAAGGAAGACGAAGAAGTCGAAGGAAGAGATAATATCTAGAAATCCCACTCCTACTTTTGTCGATGAGATGTTCGGGGGGCAAATATCAAGTGCTGTATGTTGCAAAGAATGTGGCCACACATCGACAGTTTACGAACCATTTCTAGATCTCTCTCTTCCTGTTCCAATGAAAAAATCTCTGGCCAAAAAGGTCCAACCAGTCTCTCGGACCAAGAAGTCAAAAGGGCCACCCAAGAGAAGTGGCAAGACGCATCCTAAAACAGACAAGGCTTCAGATGTTGTACCAGTTCAAATTGCCTCAGTTCCATCATCTGGTAATGAGTCCTCCCTTCAATATGGCACAACTATTATCATGGAGAAGACTTCAAGTTCTCAGAACGTTTCAGATGTTAAAGAGTCTGAAAAAGAAGTTGAGACCGAGAATGGAGGAGAATGTACTTCAGACGCTTTGACGTGGATGGATTTCCTTGGACCAGAACCAAATGCTGAAACTTATGATATTTCCACTACTCAGGATTCAGACAAAAATGTTGAAGTATTCATTAGTGATGATTCACAACAAAGCATCTGCGGGCCAAGTATNCTGACAAAAATGTTGAAGTATCCATTAGTGATGATTCACAACAAAGCATCTGCGGGCCAAGTTCAAGCTTCTGATGTTTTGCTGCTTCCTTACAAGGAAGAGAGTTCCACCGCTGAAGTAGCAAAAGTAGATGATCAGGCTTCCTCATCAGTTTTGGGCTGTGCTCAAAATGATTTTGATGGATTTGGTCTTGGTGATATGTTTGATGAGCCTGAAGTCATTATGGGCCCCATTGCGAGGCCATCCACTGGGAATGAAGTTTTGGAAAGTAGTTTCATTAGTGAGTCTGAACCTGAGGAAGTTGATAATACTGATTCTCCCGTCTCTGTGGAGAGTTGTCTAACTTATTTCACAAAGCCAGAACTTCTGTCCAATGAAAATGGATATAACTGTGAAAAATGCTCAAAAAGAGTAAAACAACAAAGGTTGGAAATGAAGAAGCAATCAAAAGTTGCTAGCAGTGCCGTAGAAAATGGATATGAATCAGCAGTAAGGGGTGATATATCATGCTTAGACAAGAACCCTTCAGTTGAAGTAAAAAATCAAAGAAATATGAATTTAGTAAACGGGTCCATAAGTTATAACAGCGGCGAAAGCTCGAATTTGAAAGAGAATGTAGATTGTTCCAGTCGAGATTGCACAAAGCCTGTCAATTGCAAGACAGGCAAGACAGATTCCCTTGTTTTGGATGCAGATGAAGCTATGGTTGATGGAGATATGAATCCTGGGCTAGCACATTCTTCAGGTTGTAATAACACCAGCAGTCAAGAATGTTCCGGTGATAAATCCAGTTGTTCTCTTTCCAACGACGATCCTAAGGGCGGTGAACGTCCACAATCTAATACCAAGCCCTTTAGTTCACAAATATGTGCTGAGAACAGTGAATCAGAAAAGGGTGAGGAGGGTGAGATGGATTCTGATTCAACAATTGTGAATGTGAAAAGAGATGCAACAAAGAGGTTTCTCATTCACAAGGCCCCTCCGATCTTGACAATTCATATAAAGAGGTTTAGTCCCGATGCTCGGGGTCGTTATAGTAAATTGAATGGCCATGTTAGATTCAAGGAAACAATTGATCTCAAACCATACATGGATACCAGGTGTACAGATAGGGAGAAGTATAATTATCGGTTGGTCGGGGTCGTGGAGCACTCCGGATCTATGAGAGGAGGCCATTATGTTGCATATGTGAGAGGGGGGAACAGGAGGAGAAGCAGCAGTGGGGAAGCTGAGGAAGGCGCGTCTGTTTGGTATTATGCAAACGATGCCAGCGTAAACGAGGTTACCCTGGATCGGGTTCTCGGTTGTGATGCATACATCTTGTTTTATGAGATAACCTGA 2643 42.87 MGKKAKKKNGRTPTKEKRVSSSSPRKVPQRSSTTVEIADDDVSVVKENSLCGHIDKCFNLNELSSKLGSSEPISCEDCQESSADRRGSKGKARHGKKKGGTSVDGKADSKAIWICLQCGHYACGGIGLPTNSQSHAVRHVRQTRHPVVIQFENPQLRWCFSCNTLLPVEKTEENGEQKDALKKIFTEARMEGRMKGSINPRSVFGCISTKAPQFKGYEQHDSHELLRVLLDGLSTEELTSRKTKKSKEEIISRNPTPTFVDEMFGGQISSAVCCKECGHTSTVYEPFLDLSLPVPMKKSLAKKVQPVSRTKKSKGPPKRSGKTHPKTDKASDVVPVQIASVPSSGNESSLQYGTTIIMEKTSSSQNVSDVKESEKEVETENGGECTSDALTWMDFLGPEPNAETYDISTTQDSDKNVEVFISDDSQQSICGPSXLTKMLKYPLVMIHNKASAGQVQASDVLLLPYKEESSTAEVAKVDDQASSSVLGCAQNDFDGFGLGDMFDEPEVIMGPIARPSTGNEVLESSFISESEPEEVDNTDSPVSVESCLTYFTKPELLSNENGYNCEKCSKRVKQQRLEMKKQSKVASSAVENGYESAVRGDISCLDKNPSVEVKNQRNMNLVNGSISYNSGESSNLKENVDCSSRDCTKPVNCKTGKTDSLVLDADEAMVDGDMNPGLAHSSGCNNTSSQECSGDKSSCSLSNDDPKGGERPQSNTKPFSSQICAENSESEKGEEGEMDSDSTIVNVKRDATKRFLIHKAPPILTIHIKRFSPDARGRYSKLNGHVRFKETIDLKPYMDTRCTDREKYNYRLVGVVEHSGSMRGGHYVAYVRGGNRRRSSSGEAEEGASVWYYANDASVNEVTLDRVLGCDAYILFYEIT 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2546244 2550562 + Cp4.1LG08g02790.1 Cpe08g00400 473366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00400 880 Gene3D Cysteine proteinases 607 880 - -
Cpe08g00400 880 Gene3D Cysteine proteinases 457 588 - -
Cpe08g00400 880 MobiDBLite consensus disorder prediction 301 332 - -
Cpe08g00400 880 MobiDBLite consensus disorder prediction 679 727 - -
Cpe08g00400 880 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 810 827 IPR018200 GO:0004843|GO:0006511
Cpe08g00400 880 Gene3D Cysteine proteinases 130 341 - -
Cpe08g00400 880 SUPERFAMILY RING/U-box 50 167 - -
Cpe08g00400 880 Pfam Ubiquitin carboxyl-terminal hydrolase 170 877 IPR001394 GO:0004843|GO:0016579
Cpe08g00400 880 Pfam Zn-finger in ubiquitin-hydrolases and other protein 75 165 IPR001607 GO:0008270
Cpe08g00400 880 MobiDBLite consensus disorder prediction 24 38 - -
Cpe08g00400 880 SUPERFAMILY Cysteine proteinases 185 878 IPR038765 -
Cpe08g00400 880 SMART Zf_UBP_1 103 156 IPR001607 GO:0008270
Cpe08g00400 880 ProSiteProfiles Zinc finger UBP-type profile. 49 186 IPR001607 GO:0008270
Cpe08g00400 880 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 181 - -
Cpe08g00400 880 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 181 878 - -
Cpe08g00400 880 MobiDBLite consensus disorder prediction 667 741 - -
Cpe08g00400 880 MobiDBLite consensus disorder prediction 80 103 - -
Cpe08g00400 880 MobiDBLite consensus disorder prediction 1 39 - -
Cpe08g00400 880 MobiDBLite consensus disorder prediction 304 320 - -
Cpe08g00400 880 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 118 880 IPR028889 -
Cpe08g00400 880 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 181 - -
Cpe08g00400 880 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 181 878 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00400 K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] - csv:101204267 1023.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01596 Cpe08g00400 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00400 Cpe-Chr8:2546244 Cpe07g00164 Cpe-Chr7:972471 4.59E-17 dispersed
Cpe03g01596 Cpe-Chr3:12311767 Cpe08g00400 Cpe-Chr8:2546244 1.44E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00400 Cpe_Chr08 FPKM 7.85506 8.747165 19.73632 20.479479 14.084906 12.43972 14.92883 14.136585 13.699011 13.320149