Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00405 ATGGGGAAAGCCGATAACATCCTCCAAACTCTCGGGGACTTCACCAGCAAAGAGAATTGGGACAGTTTCTTCACCATCCGCGGCCATGGGGATGCTTTCGAGTGGTATGCCGAGTGGCCTCAGCTCAAAGATCCACTCATTTCCCACCTTCCTTCCCTCTCCCAAACAGCGTCTCCTCAGATTCTCGTTCCTGGCTGCGGAAACTCCAGTCTATCTGAACAGCTTTACGACGCTGGCTTTCGATGCATCACCAATATTGATTTCTCTAAAGTTGCAATCTCCGATATGCTGCGCCGGAACGTGAGGGAACGCCCCGATATGCGGTGGCGTGTCATGGATATGACGAGCATGCAGGTGAAAAGAGTTCTAAAACCAGGAGGAAAGTTTATTTGTCTTACATTAGCAGAATCTCATGTTTTAGGCTTGCTCTTTCCCAAGTTTCGTTTTGGATGGAAGATGAGTATTCATGTCATACCTCAGAAACCACCGAGTAAGCCTAATTTTCAAACCTTTATGGTGGTGGTGGAGAAAGATGAATCTACTGCATTGCACCAGATAGAATCTTCTTTAAATTTTTCTTTGCTCGATTCCCATGGAAATCAGACTCGTGAACTTGTCAAAACTCTTGAGAACGAGAATATAATTCGCCAAAAGTGTTCCAGTGGTGCTGATTTGCTGTTATCTCTTGAAGACCTGCAACTAGGAGCAAAGGGGGATCTGCAGAAGCTTCACCAAGGCCGTCGGATTCAATTTACTTTAGGTGGACAAGGGACCTCCGTTTTCAGTTATAGAGCTGTACTTCTTGATGCTCGGGAACAGTCTGGCTCATTCTTGTATGAATGCGGAGTTTTTATAGTGCCTAAGACCCGAGCTCATGAATGGCTGTTCTCTTCAGAAGAGGGCCAGTGGATGGTCGTTGAGAGTTCAAAAGCAGCTCGCCTTATAATGATTCTATTAGATGAGACACAATCTGGAGCCAACATGGATGCTATTCAGAAAGATTTATCTCCCCTAGTTAAACAATTGGCACCGGGTGAAAATGACAGTGGATCTCAAATTCCATTTATGACGGCAAGTGATGGGATCAAGGAACGTAATTGTGTTTTTCAGGGTACGTCTACATTAACGGGATCGATAGTTGTTGAAGACGTGATATATGAACATGTAAGTAATGATGCGAGTCGCATCTTCCCAACGGGAGACTTGATATTTCGTCGCCTTATTTTCCAAAGAACAGAGAGTTTGGTGCAGTCGGAGGCTTTGTTGACAAGGGAAAGACTTCATGAGACAGTTTCTGGTCAGATGGACAGGAAAAGGTCTCATTCATCATCCAAATCGAAGAATAAAGGAAAGAAGAAACTGAATAAGGAGTCCAGTGACCAAATGAAGGTTTATCATTGCTATCTGGCAAGTTCTTATCATTTGGGGATCATTTCGGGGTTTATGTTGATATCTCAATATTTGGAGAGTGTAGCATCAGCTAGAACAACGGCAAAGGTCCGCTCCTTCTATCTATGTCTTGTGAATACAGTTGTCATTGGTCTTGGAGCAGGTTTGCTGCCCATGTTCCTCCGTGCATGCATGTCTTTTTTACACATTGAGGTGGTTGAGTTGGATTCAACAATTCTCAAACTTGCAAGGGATTACTTCGATTTTACTGAGGATGCAGATTTGACGGTACATATTGCTGATGGGATTCAGTTTGTTAGAGAATTCAGAAATTCTGGGGCAAAGGATTCATCAGCAATTGTTCTCGACAATGGAAACTCATCTCGTGTAAAACGTCGAGGAGATACGAAGATTGACATACTTATTATCGACGTGGATGCAACAGACTCAAGCTCTGGAATGACCTGCCCAGCAGCTGATTTTGTAGAAGAACCGTTTCTTCTAGCAGCGAAAGACGCCCTCTCCGAGCAGGGTATTTTTATTGTAAACTTGGTCACACGATCTCCGACCATTAACGATATGGTTGTCTCAAGAATGAAAGGAGTCTTTAATCACCTCTTTTCCCTTCAACTCGAGGAAGAAGTGAATGAAGTGCTTTTTGCTCTTCCTTCAGAGTTCTGTATAAAGGAGGATCTCTTCAATGAATCAGCTCTTCAGCTTGAGAAACTTTTAAATCTGAAACACCCAGAAATCAGGCAAAGCATAGTTGATGCTACAAAGAAGATCAGATGTCTGAAGTAA 2190 43.38 MGKADNILQTLGDFTSKENWDSFFTIRGHGDAFEWYAEWPQLKDPLISHLPSLSQTASPQILVPGCGNSSLSEQLYDAGFRCITNIDFSKVAISDMLRRNVRERPDMRWRVMDMTSMQVKRVLKPGGKFICLTLAESHVLGLLFPKFRFGWKMSIHVIPQKPPSKPNFQTFMVVVEKDESTALHQIESSLNFSLLDSHGNQTRELVKTLENENIIRQKCSSGADLLLSLEDLQLGAKGDLQKLHQGRRIQFTLGGQGTSVFSYRAVLLDAREQSGSFLYECGVFIVPKTRAHEWLFSSEEGQWMVVESSKAARLIMILLDETQSGANMDAIQKDLSPLVKQLAPGENDSGSQIPFMTASDGIKERNCVFQGTSTLTGSIVVEDVIYEHVSNDASRIFPTGDLIFRRLIFQRTESLVQSEALLTRERLHETVSGQMDRKRSHSSSKSKNKGKKKLNKESSDQMKVYHCYLASSYHLGIISGFMLISQYLESVASARTTAKVRSFYLCLVNTVVIGLGAGLLPMFLRACMSFLHIEVVELDSTILKLARDYFDFTEDADLTVHIADGIQFVREFRNSGAKDSSAIVLDNGNSSRVKRRGDTKIDILIIDVDATDSSSGMTCPAADFVEEPFLLAAKDALSEQGIFIVNLVTRSPTINDMVVSRMKGVFNHLFSLQLEEEVNEVLFALPSEFCIKEDLFNESALQLEKLLNLKHPEIRQSIVDATKKIRCLK 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2585603 2596677 + Cp4.1LG08g02820.1 Cpe08g00405 473371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00405 729 Gene3D Vaccinia Virus protein VP39 119 193 IPR029063 -
Cpe08g00405 729 Gene3D Vaccinia Virus protein VP39 12 118 IPR029063 -
Cpe08g00405 729 CDD AdoMet_MTases 61 131 - -
Cpe08g00405 729 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 119 697 - -
Cpe08g00405 729 MobiDBLite consensus disorder prediction 430 458 - -
Cpe08g00405 729 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 510 695 IPR029063 -
Cpe08g00405 729 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 16 135 IPR029063 -
Cpe08g00405 729 Gene3D Vaccinia Virus protein VP39 476 714 IPR029063 -
Cpe08g00405 729 PANTHER EEF1A LYSINE AND N-TERMINAL METHYLTRANSFERASE 119 697 - -
Cpe08g00405 729 PANTHER EEF1A LYSINE AND N-TERMINAL METHYLTRANSFERASE 12 118 - -
Cpe08g00405 729 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 12 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00405 K25166 EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase [EC:2.1.1.-] - csv:101211869 1190.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00405 Cpe-Chr8:2585603 Cpe08g00704 Cpe-Chr8:5478758 1.25E-17 dispersed
Cpe08g00405 Cpe-Chr8:2585603 Cpe12g00846 Cpe-Chr12:7492842 4.41E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g950 . . Bda03g01134 . Bpe04g01077 . . . . . . . . . Sed02g1516 Cpe08g00405 . Bhi01g00216 Tan10g0506 Cmetu06g0645 Lac12g2024 Hepe05g1769 . Lcy11g1784 . . . . . . . . Cone15ag0259 . . Lsi05g01851 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010449 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00405 Cpe_Chr08 FPKM 2.726135 4.688883 2.952782 2.984526 1.294529 1.694206 2.240433 1.955624 1.907314 1.972381