Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00408 ATGGAAACCAAGATTGCTTTTATATCGATTGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCCTTTCCCGTCTCTTTTTGCTCTCCGATTCTTCTTCCTCCGCTTCGCCTCTGCAAGTTTCTTGCGGTTTCTCGTTCGATCCTCCCGCTCCTGCCGCTGTTCGCCGTTCCGTCTTCCGCCAGCTGGATGGTATTCTTGTCGTCGAAATCATTCACCGAGATCAGTCGATGATGCGCAAAGGAAGAAAATTCTTTTATCCTTTTAATTTTTGGATGTTTAACTCATTTATTCAATTCATCGTGGACTTCTTGGGAATTACATTAGTGGTGATTCAAAGATTTTTGGACCCGAATCACTTTGCCATTTATGTGGATGATTCTATTGTTGTAGGTTTGAAAGATAAAGGAAAGGCTGTTGGAATGAGCTTTCAAAGTAGAAATGATCTACAGGAATGGAGTGCAAGAGTTGTTGAGCGAGGAACAGTAATGGACTTCGACCTAAATTGCCCACCTCCAGATGAGTGCATTGATCCAACTGGCCCTCATCAGGAAGCAACACAGTACTACAATCATTACCAAGGACAAGCTATGGACAATCCCGAGTTTGTCGACGAGGACATTGCTATAATCTCCCCTAGGAAATTTGCTGAGGCCAGGAAGAACTTTAGACGAAACCACTTTGAGAGTAGCTGTGGTGTTGCCATTAGACGTAATGGTGCTTTCTCAGATTTAACGAGTTTGGCCCCTTTTACAATTTGGCCGCCCCTTACAAACCGCAATAACGTATCTATACAAGAACAAACGATTCACAACTTGGACCTTTGCTTAAGCTGCGAAAGCAGTAGTAAAGCCACAAAGGCAACAATTGACACAGACATCCCTTCTGCACTTGCACAAACTAGCAGCAGCCTCCCACCTGCAGCAGCCTCGGGTTTGCGGTGCGCGATCTGCATAGAAGCATTGGTTGAAGAAACAACAACCAAATGCGGGCACGTTTTCTGCAAGAGTTGCATCGAAACAGCCATAGCTACCCAGCACAGATGTCCTATATGTCGGCGTAAGCTTCGAAAACGAGATATTATCCGAATTTACCTACCGTTTTGA 1113 45.64 METKIAFISIAASSSSSSSSSSSPLSRLFLLSDSSSSASPLQVSCGFSFDPPAPAAVRRSVFRQLDGILVVEIIHRDQSMMRKGRKFFYPFNFWMFNSFIQFIVDFLGITLVVIQRFLDPNHFAIYVDDSIVVGLKDKGKAVGMSFQSRNDLQEWSARVVERGTVMDFDLNCPPPDECIDPTGPHQEATQYYNHYQGQAMDNPEFVDEDIAIISPRKFAEARKNFRRNHFESSCGVAIRRNGAFSDLTSLAPFTIWPPLTNRNNVSIQEQTIHNLDLCLSCESSSKATKATIDTDIPSALAQTSSSLPPAAASGLRCAICIEALVEETTTKCGHVFCKSCIETAIATQHRCPICRRKLRKRDIIRIYLPF 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2619244 2623702 + Cp4.1LG08g02700.1 Cpe08g00408 473374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00408 370 SUPERFAMILY RING/U-box 313 367 - -
Cpe08g00408 370 ProSiteProfiles Zinc finger RING-type profile. 317 355 IPR001841 -
Cpe08g00408 370 Pfam Zinc finger, C3HC4 type (RING finger) 316 354 - -
Cpe08g00408 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 369 IPR013083 -
Cpe08g00408 370 SMART ring_2 317 354 IPR001841 -
Cpe08g00408 370 ProSitePatterns Zinc finger RING-type signature. 332 341 IPR017907 -
Cpe08g00408 370 PANTHER ELFLESS, ISOFORM B 146 369 - -
Cpe08g00408 370 PANTHER ELFLESS, ISOFORM B 146 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00408 K22651 RNF4; E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27] - mcha:111016128 363.614
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01604 Cpe08g00408 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00408 Cpe-Chr8:2619244 Cpe19g01163 Cpe-Chr19:7791016 1.54E-06 dispersed
Cpe15g00143 Cpe-Chr15:1195312 Cpe08g00408 Cpe-Chr8:2619244 1.27E-28 wgd
Cpe03g01604 Cpe-Chr3:12355791 Cpe08g00408 Cpe-Chr8:2619244 1.33E-113 wgd
Cpe05g00125 Cpe-Chr5:643958 Cpe08g00408 Cpe-Chr8:2619244 1.52E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g943 . . . . . . . . . . . Cma14g01904 Car06g01058 . Sed02g1522 Cpe08g00408 Cpe03g01604 Bhi01g00204 Tan10g0502 Cmetu06g0591 . Hepe05g1772 . Lcy11g1787 . . . . . . . . . . . . . . Cme06g00371 . . . . . . . . . Cmo06g01242 Cmo14g01958 . . . . . . . . . . . . . Cla05g00335 Cam05g0367 Cec05g0371 Cco05g0372 Clacu05g0362 Cmu05g0347 Cre05g0411 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013959 0 1 0 0 0 1 1 1 1 0 1 1 2 1 1 2 1 0 2 1 0 1 1 1 1 0 0 2 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00408 Cpe_Chr08 FPKM 14.359949 15.712902 12.78966 12.898837 11.313987 13.883691 12.429486 16.135096 17.911953 18.439207