Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g00456 | TTGGGCTTTGCTTCTCACTTTGTTAACCACCTGCAGCGGCGGCTGGATGCCGACGAAGGTTACGGCCAGTTCCACGACGGTGATGAAGACCACAACAACGCTCAACAACCCAACTCCGGCGGAGATATTATGGGCCGCCGCCCGAGAGGCCGACCGCCCGGTTCGAAAAATAAACCGAAGCCACCGGTTATTATTACCAGAGAAAGCGTTAACACCCTTCAAGCCCACGTCTTGGAAGTCAACACTGGTTGCAATGTGTTTGACTCGATCGCCACGTATGCTCGGAAATGCCAACGTGGCATCTGTATCCTGAGCGGTACTGGCACCGTCACTAATGTTAACTTGCGGCAACCTGCGACCGGTAGCGCCGTTATCACACTCTATGACAGTATCTTTCTCGCCGGAGGGCAAGGGCAGGTTATCGGAGGGAAGGTTGTTGGCTCTCTGATTGCGTACGGACCGGTAATTGTCATCGCTTCGTCGTTTACCAATGTTAGTTATGAGAGGCTGCCGTTGGACGACGGTGGAGGTGGCGGCGGCGGCGGCGGCAGGGACCCGTCAGGTGGGTCAGTTCTTGAATATGCCGTTGAACATGTCGGGGAA | 603 | 55.39 | LGFASHFVNHLQRRLDADEGYGQFHDGDEDHNNAQQPNSGGDIMGRRPRGRPPGSKNKPKPPVIITRESVNTLQAHVLEVNTGCNVFDSIATYARKCQRGICILSGTGTVTNVNLRQPATGSAVITLYDSIFLAGGQGQVIGGKVVGSLIAYGPVIVIASSFTNVSYERLPLDDGGGGGGGGGRDPSGGSVLEYAVEHVGE | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 2934971 | 2935948 | - | Cp4.1LG08g02280.1 | Cpe08g00456 | 473422 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g00456 | 201 | MobiDBLite | consensus disorder prediction | 20 | 62 | - | - | |
| Cpe08g00456 | 201 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 70 | 175 | - | - | |
| Cpe08g00456 | 201 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 23 | 127 | IPR014476 | GO:0003680 | |
| Cpe08g00456 | 201 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 130 | 175 | IPR014476 | GO:0003680 | |
| Cpe08g00456 | 201 | CDD | DUF296 | 76 | 162 | IPR005175 | - | |
| Cpe08g00456 | 201 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 23 | 127 | - | - | |
| Cpe08g00456 | 201 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 130 | 175 | - | - | |
| Cpe08g00456 | 201 | Gene3D | - | 74 | 129 | - | - | |
| Cpe08g00456 | 201 | ProSiteProfiles | PPC domain profile profile. | 70 | 201 | IPR005175 | - | |
| Cpe08g00456 | 201 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 75 | 164 | IPR005175 | - | |
| Cpe08g00456 | 201 | PIRSF | ESCAROLA | 128 | 197 | IPR014476 | GO:0003680 | |
| Cpe08g00456 | 201 | PIRSF | ESCAROLA | 4 | 130 | IPR014476 | GO:0003680 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g00456 | Cpe-Chr8:2934971 | Cpe08g00854 | Cpe-Chr8:6759896 | 6.24E-54 | dispersed | |
| Cpe12g00049 | Cpe-Chr12:266568 | Cpe08g00456 | Cpe-Chr8:2934971 | 3.14E-55 | wgd | |
| Cpe17g00291 | Cpe-Chr17:1974212 | Cpe08g00456 | Cpe-Chr8:2934971 | 3.95E-50 | wgd | |
| Cpe03g01656 | Cpe-Chr3:12655423 | Cpe08g00456 | Cpe-Chr8:2934971 | 1.19E-72 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g00456 | - | - | cmax:111474908 | 219.935 |