Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe08g00473 | ATGGCAGCCATTAAAAGCGTTTCCGTTCTCGTTCTTGTTCTTGTTCTTGGGTCGGCCATTTTTGCTTACTCGGATAACGAAGTGAAAAATTGGTGCAGCCAAACGCCATATCCAGCTCCATGTGAACATTTTCTCACGGCAAAAAAAACCGGCACAGAAAAAAACCGGCCAATCGCTTCAAAATCCCACTTCCTTAAAGTTCTGGTCGAATCGGCCATCGAGCGAGCCGTTTTGGCCCAAAAAAACGCCGTCGCTCTCGGGCCAAAGTGCCAAAACGACCGAGAAAAATCTGCATGGACCGACTGTATCGAGCTCTACGACCAAATCATTCACCGGCTCAACCGGACCGCCGGCCGCTGCTCCCCGGTCGATGTTCAAACCTGGCTCAGTGCTGCTCTCACAGCTCTTGACACGTGTCGAGCTGGGTTTGAGGAGCTTGGGGTTTCGGCTTTCGGCTACTCTTTAACGGCTAATAATGTTTCGAAGCTGATTAGTGATGGGTTGTCGGTGAATAAGCCGGCTTCGGCTGAGGGGTTTGAGCCGCCGAGTATGAATGAAGGGTTTCCGACGTGGGTTAAGCCGGGAGAAAGGAAGCTGTTGCAGTCGAGCGCTCCGAATGCTAACGTGGTGGTGGCGAAGGATGGGTCTGGGAGATTTAGGACGGTGAGTGAGGCGGTCGCCGCCGCGAAGGGCGGAGGGAGGTTTGTGATTTATGTGAAGGCCGGGGTTTATAGTGAGAATGTTGAGATTAAGGCTAAGAATGTTATGTTGATCGGCGATGGCATCGGAAAAACTATCATCACCGGAAGTAGAAGCGTCGGCGGCGGTTCCACCACTTTTAGATCCGCCACCGTTGTTCATTAG | 864 | 52.08 | MAAIKSVSVLVLVLVLGSAIFAYSDNEVKNWCSQTPYPAPCEHFLTAKKTGTEKNRPIASKSHFLKVLVESAIERAVLAQKNAVALGPKCQNDREKSAWTDCIELYDQIIHRLNRTAGRCSPVDVQTWLSAALTALDTCRAGFEELGVSAFGYSLTANNVSKLISDGLSVNKPASAEGFEPPSMNEGFPTWVKPGERKLLQSSAPNANVVVAKDGSGRFRTVSEAVAAAKGGGRFVIYVKAGVYSENVEIKAKNVMLIGDGIGKTIITGSRSVGGGSTTFRSATVVH | 287 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 3029761 | 3031128 | - | Cp4.1LG08g02020.1 | Cpe08g00473 | 473439 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe08g00473 | 287 | PANTHER | PECTINESTERASE | 8 | 286 | - | - | |
| Cpe08g00473 | 287 | CDD | PMEI-like_3 | 31 | 176 | - | - | |
| Cpe08g00473 | 287 | PANTHER | PECTINESTERASE | 8 | 286 | - | - | |
| Cpe08g00473 | 287 | SUPERFAMILY | Pectin lyase-like | 202 | 286 | IPR011050 | - | |
| Cpe08g00473 | 287 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 22 | 172 | IPR035513 | - | |
| Cpe08g00473 | 287 | Pfam | Pectinesterase | 208 | 286 | IPR000070 | GO:0030599|GO:0042545 | |
| Cpe08g00473 | 287 | Pfam | Plant invertase/pectin methylesterase inhibitor | 27 | 167 | IPR006501 | GO:0004857 | |
| Cpe08g00473 | 287 | Gene3D | - | 202 | 287 | IPR012334 | - | |
| Cpe08g00473 | 287 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 7 | 162 | IPR006501 | GO:0004857 | |
| Cpe08g00473 | 287 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 26 | 171 | IPR035513 | - | |
| Cpe08g00473 | 287 | SMART | PMEI_2 | 23 | 170 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g00731 | Cpe-Chr5:4483697 | Cpe08g00473 | Cpe-Chr8:3029761 | 9.38E-81 | dispersed | |
| Cpe08g00473 | Cpe-Chr8:3029761 | Cpe08g01273 | Cpe-Chr8:9206612 | 1.17E-35 | dispersed | |
| Cpe14g00157 | Cpe-Chr14:854214 | Cpe08g00473 | Cpe-Chr8:3029761 | 7.31E-25 | dispersed | |
| Cpe03g01668 | Cpe-Chr3:12742450 | Cpe08g00473 | Cpe-Chr8:3029761 | 1.27E-153 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe08g00473 | K01051 | - | csv:101217552 | 417.542 |