Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00474 ATGCCCTTTCCCTTTGCAACACCTCTTCTTCTCTTCTTAGCCATCATGGCTTCCTCTATTTCTTCGTTAGACGAGCCGGACGCGGTTCGGTTGTTGCGAACCGGAATTGTGAAAGCCAGATCCGAAATATGTAACTTGAAACGACGTCGCTTTGAACGTGGGAATGTGCAGACCGCACTTGGCGATTGCCATACTCTCTACGAGGAAGCCGACAGCCGGCTTGCCGGGATGTTGGTTGGAGAGAATTATTCAGCGGATGATGCTCGGATATGGCTCAGCGCCGCCGTGGCTAATCATCGGAGTTGTTTGGATGGCTTGGAAGAAGTCGGCGCTGTGCCGGCGGCGGATGGGAATAACTTGACCGTGTTGCTCACCGGAGCTCTGCATTTATACGACAAAATTGCGGCCGTTGAGGAGCGGAATGGACGGGAACGAGTGGAGAAAGAGAGATTGACGGAAAACGGGAGAATCAACTTGGCGACATGGAACGCGGCGACGTCGAAGCCGGACTATGTGGTGGCGGTGGACGGCTCCGGCACCCACACAACCATAAACGGCGCGGTGGCGGCTCTGGCCAGAGATGGCCGTAGACGGCGGTCGGAGAGAGTGGTGATATATGTGAAAGCCGGAGTTTACAAGGAGAATGTGGAAATTGGAATGCAGTTGAAGAACGTCATGGTCGTCGGCGACGGCGCCGACAAAACCATCGTCACCGGTAACCGCAACGTCCCGGACGGCGCCACCACTTACAGCTCAGCTACATTTGGCGTTTCCGGTGACGGATTCTGGGCAAGAGACATAACATTCGAGAACACCGCCGGACCGGGAAAGCAACAAGCGGTGGCGCTACGACTGAATTCCGACCTCGCCGTCGTATACCGGTGCACAATAAAAGGCTATCAGGACACCCTGTTCCTCCACTCCCTCCGTCAATTCTACCGCGACTGCCAAATCTACGGCACCATAGATTTCATCTTCGGCAACGCCGCCGCCGTTCTCCAAAACTGCGACATCTTCGTCCGACGTCCGATACGCCACCAGGCCAACATGATCACGGCCCAAGGCCGCGACGATCCAGCCGAGGCCACCGGAATTTCGATTATCAGCTGCAGAGTCAGGGCGGCGCCCGAACTCGCCGCCGTCAAGGGCGATTTCAGGACCTACCTCGGTCGGCCGTGGAAGAGATTTTCAAGGACGGTGGTTATGACGACGGATTTGGACGGATTAATCGACCCGAAAGGGTGGGGAGAATGGAGGGGCGATTTTGCAATTTCCACTCTGTTTTACGCTGAGTTTAAGAACACTGGCGGTGGTTCTTCTACTAGATTTAGGGTTCATTGGCCGGGATTTCATGTCCTCCGTAGCGCGGAGGAGGCGCGGCGTTTCACGGTGGCTGAGTTTCTTCACGGCGACGCTTGCATTCCGGCCACCGGCGTGCCATTCGAGGCTGGAGTTTGA 1458 56.04 MPFPFATPLLLFLAIMASSISSLDEPDAVRLLRTGIVKARSEICNLKRRRFERGNVQTALGDCHTLYEEADSRLAGMLVGENYSADDARIWLSAAVANHRSCLDGLEEVGAVPAADGNNLTVLLTGALHLYDKIAAVEERNGRERVEKERLTENGRINLATWNAATSKPDYVVAVDGSGTHTTINGAVAALARDGRRRRSERVVIYVKAGVYKENVEIGMQLKNVMVVGDGADKTIVTGNRNVPDGATTYSSATFGVSGDGFWARDITFENTAGPGKQQAVALRLNSDLAVVYRCTIKGYQDTLFLHSLRQFYRDCQIYGTIDFIFGNAAAVLQNCDIFVRRPIRHQANMITAQGRDDPAEATGISIISCRVRAAPELAAVKGDFRTYLGRPWKRFSRTVVMTTDLDGLIDPKGWGEWRGDFAISTLFYAEFKNTGGGSSTRFRVHWPGFHVLRSAEEARRFTVAEFLHGDACIPATGVPFEAGV 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3039595 3042068 + Cp4.1LG08g02050.1 Cpe08g00474 473440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00474 485 Pfam Plant invertase/pectin methylesterase inhibitor 29 112 IPR006501 GO:0004857
Cpe08g00474 485 Gene3D - 164 485 IPR012334 -
Cpe08g00474 485 SMART PMEI_2 18 130 IPR006501 GO:0004857
Cpe08g00474 485 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 10 484 - -
Cpe08g00474 485 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 134 IPR035513 -
Cpe08g00474 485 Coils Coil 134 154 - -
Cpe08g00474 485 ProSitePatterns Pectinesterase signature 2. 318 327 IPR033131 -
Cpe08g00474 485 PANTHER PECTINESTERASE 10 484 - -
Cpe08g00474 485 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 113 IPR035513 -
Cpe08g00474 485 Pfam Pectinesterase 170 471 IPR000070 GO:0030599|GO:0042545
Cpe08g00474 485 CDD PMEI-like_4 8 131 - -
Cpe08g00474 485 SUPERFAMILY Pectin lyase-like 165 483 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00474 Cpe-Chr8:3039595 Cpe14g00042 Cpe-Chr14:223595 8.74E-115 dispersed
Cpe08g00474 Cpe-Chr8:3039595 Cpe05g00601 Cpe-Chr5:3652067 5.50E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00474 K01051 - csv:101217635 740.725