Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00486 ATGAACTGCTTTACTTCAAGGAGTGTCTCCGGCTGTTTCTTCTCCTCGTTGACGATCATGGACTTCGAAGCTCAGGCTCAGAGCTCGGACGGTTCGTCGACGTCTTCGAAGCTGGTTCTTTATTCTTTCTGGCAGAGTTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAATCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAGGAGAGCAATTAAGTCCAGATTTTGAGCGCCTAAATCCTCTCAAGTATGTTCCTGTATTAGTAGATGGTGCTGTGGTAGTTTCAGACTCTTACGCGATTTTACTGTATTTGGAAGAGAAATATCCACAGAAGGCGCTGCTGCCTGCTGATCTTCGTTTAAAATCTCTTAATCTGCAAGTGGCAAGTATTGTCAGCTCAAGCATACAGCCTCTTATTATGTTGGGATTGCTGAAAACCATCGAGGAAAAATTTGGTCCAGAAGAGCAACTACCGTGGGCTCAGACTAATATAGAAAAGGGTTTCAATGCTCTAGAGAAACTGCTGAAGAATTTTTCTGGCCGATATGCGCTGGGAGAAGAAGCTGATGTATTTTTGGCTCCCCAAGTTTCAGTTGCTTTTGGGAGGTTCAACATTGACACGTCCAAGTTCCCTACTTTAGCAAGGATTTATGAATCTTACAAGATGTTACCAGAATTCCAAGCCTCCTCACCAGAAAGGCAGCCCGACGCCCTTCACTAG 735 45.31 MNCFTSRSVSGCFFSSLTIMDFEAQAQSSDGSSTSSKLVLYSFWQSSCSWRVRFALNLKGLSYEYRAVNLGRGEQLSPDFERLNPLKYVPVLVDGAVVVSDSYAILLYLEEKYPQKALLPADLRLKSLNLQVASIVSSSIQPLIMLGLLKTIEEKFGPEEQLPWAQTNIEKGFNALEKLLKNFSGRYALGEEADVFLAPQVSVAFGRFNIDTSKFPTLARIYESYKMLPEFQASSPERQPDALH 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3114572 3120133 - Cp4.1LG08g01860.1 Cpe08g00486 473452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00486 244 SFLD Glutathione Transferase (cytosolic) 38 224 IPR040079 -
Cpe08g00486 244 CDD GST_N_Zeta 38 110 IPR034333 -
Cpe08g00486 244 Gene3D - 119 244 - -
Cpe08g00486 244 TIGRFAM maiA: maleylacetoacetate isomerase 40 242 IPR005955 GO:0003824|GO:0005737|GO:0009072
Cpe08g00486 244 SUPERFAMILY Thioredoxin-like 36 120 IPR036249 -
Cpe08g00486 244 SFLD Main (cytGST) 38 224 - -
Cpe08g00486 244 SUPERFAMILY GST C-terminal domain-like 118 242 IPR036282 -
Cpe08g00486 244 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 122 244 IPR010987 -
Cpe08g00486 244 Gene3D Glutaredoxin 40 116 - -
Cpe08g00486 244 PANTHER MALEYLACETOACETATE ISOMERASE 26 243 - -
Cpe08g00486 244 PANTHER GLUTATHIONE S-TRANSFERASE 2-LIKE ISOFORM X1 26 243 - -
Cpe08g00486 244 Pfam Glutathione S-transferase, N-terminal domain 40 116 IPR004045 -
Cpe08g00486 244 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 36 117 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01046 Cpe-Chr5:6918361 Cpe08g00486 Cpe-Chr8:3114572 2.51E-89 dispersed
Cpe05g01048 Cpe-Chr5:6927048 Cpe08g00486 Cpe-Chr8:3114572 1.29E-82 dispersed
Cpe08g00486 Cpe-Chr8:3114572 Cpe08g00370 Cpe-Chr8:2308785 3.48E-11 dispersed
Cpe08g00486 Cpe-Chr8:3114572 Cpe03g01558 Cpe-Chr3:12093760 8.20E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00486 K01800 - csv:101213403 360.918