Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00488 ATGGAAGAGAGAGAGGCCATAAGTACAGGAGTAACTGTGATAGGAGCCGAAGCTCCGTCGGCTTATCATGTGGCTCCGAGAACCGAGAACCCGCCGCCGGCCGGTGGTTCTCCCACCGTCGCCGCCACGCCGGTCAGCGTTGGGTTGCCTGCTAGTGGAACCACAGGGAAGAAGAAGCGAGGCAGACCTAGGAAATACGGCCCGGATGGAACGATCACCATGGCATTGTCGCCATTGCCGCTTTCGTCCTCAGCTCCGGGGGCCAGCGGGTTCTCCATTACCAAGCGAGGGAAGAGCCGGTTAGGCGGCTCCGATTTGAAGCAAAACAAGAAAATGGGAATGCAATATATAGAATTTGCAGTTTGCTTCACTTTGTGTGTAAGAGCGAGTCGTTTTCGAGATTCCGTCTCGATCGAGTCGAAATGCTACTCTGAATATCATGGAAGATTATGCCAATGGAATGCATGTAATGTCGGTACAACAAACTTCATGCCTCATGTCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCGTTTTCTCAACAAGGTCCTCGAGCAATCTGTGTTCTTTCTGCGAATGGATTAGTTTCAAATGTCACTCTTCGGCAGCCCGATTCTTCGGGAGGTACTTTAACATATGAGGGTCGTTTCGAGATACTTTCCTTATCTGGATCATTCACTCCTTCTGAAAACCAAGGAGCGAGAAGCAGGTCGGGTGGGTTGAGCGTCTCCTTGGCAAGCCCGGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTGATAGCTGCAAGCCCTATACAGGTTGTGGTAGGGAGTTTTGTACCAACCAGCCAACCCGATCCGAAAGTAAAGAAACCGAAGCCCGAGTTGTTGTTAACTGCAGCCCCTGTTGCTGCAGCGCCAAGCACGACACCAGCCACCACCGTGCCTACTTCCTCCAATGCTGATACAGACGACGGGTTAAACGTTAACGGTCAGCAAACTCCTGAATCCCAAAAACCAACTACTTTCCCTCCTGCTAGTTTCGAGAGAGAGCGAGACGATTGGGGTGCTGCCAATACTGCTGTGCTTTCCTTGCAGGAGCCAAGAAATACCGGTACCGCCAATACTGCTGTGCTTTCCTTGCAGGAGCCGAGAAATACCGGTACCGACATCAATATATCGCTGCCAGACTAA 1191 51.55 MEEREAISTGVTVIGAEAPSAYHVAPRTENPPPAGGSPTVAATPVSVGLPASGTTGKKKRGRPRKYGPDGTITMALSPLPLSSSAPGASGFSITKRGKSRLGGSDLKQNKKMGMQYIEFAVCFTLCVRASRFRDSVSIESKCYSEYHGRLCQWNACNVGTTNFMPHVITVNAGEDVTMKIISFSQQGPRAICVLSANGLVSNVTLRQPDSSGGTLTYEGRFEILSLSGSFTPSENQGARSRSGGLSVSLASPDGRVVGGGVAGLLIAASPIQVVVGSFVPTSQPDPKVKKPKPELLLTAAPVAAAPSTTPATTVPTSSNADTDDGLNVNGQQTPESQKPTTFPPASFERERDDWGAANTAVLSLQEPRNTGTANTAVLSLQEPRNTGTDINISLPD 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3132250 3136524 - Cp4.1LG08g01870.1 Cpe08g00488 473454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00488 396 MobiDBLite consensus disorder prediction 305 343 - -
Cpe08g00488 396 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 118 IPR039605 GO:0003680
Cpe08g00488 396 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 279 IPR005175 -
Cpe08g00488 396 MobiDBLite consensus disorder prediction 17 105 - -
Cpe08g00488 396 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 285 - -
Cpe08g00488 396 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 150 355 - -
Cpe08g00488 396 Gene3D - 165 292 - -
Cpe08g00488 396 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 150 355 IPR039605 GO:0003680
Cpe08g00488 396 MobiDBLite consensus disorder prediction 76 90 - -
Cpe08g00488 396 CDD DUF296 165 278 IPR005175 -
Cpe08g00488 396 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 118 - -
Cpe08g00488 396 ProSiteProfiles PPC domain profile profile. 159 298 IPR005175 -
Cpe08g00488 396 MobiDBLite consensus disorder prediction 300 348 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00488 Cpe14g00855 CCT
Cpe08g00488 Cpe14g00855 ECH
Cpe08g00488 Cpe13g00201 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00281 Cpe-Chr5:1584860 Cpe08g00488 Cpe-Chr8:3132250 1.76E-29 dispersed
Cpe05g00713 Cpe-Chr5:4376541 Cpe08g00488 Cpe-Chr8:3132250 4.78E-36 dispersed
Cpe08g00488 Cpe-Chr8:3132250 Cpe09g00137 Cpe-Chr9:808107 1.07E-68 dispersed
Cpe10g00262 Cpe-Chr10:1572195 Cpe08g00488 Cpe-Chr8:3132250 3.66E-10 dispersed
Cpe13g00201 Cpe-Chr13:1547397 Cpe08g00488 Cpe-Chr8:3132250 1.78E-25 wgd
Cpe03g01680 Cpe-Chr3:12807604 Cpe08g00488 Cpe-Chr8:3132250 9.26E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00488 - - cpep:111801216 611.298