Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00501 ATGGTGAGAGGCAAAACTCAGATGCGGCGGATCGAAAACGCCACGAGTCGCCAGGTCACGTTTTCGAAGCGCCGCAATGGGTTGCTCAAGAAGGCCTTTGAGCTCTCAGTGCTCTGTGAAGCTGATGTGGCTCTCATCATTTTCTCTTCTACTGGGAAGCTTTGTGAATTTGCTAGCTCAAGCATGCAGGCCACAGTGGAGCGATTTCAAAGACATACAAGGGAAACCCATCATCTTGAACGTTCTTTACCTCATCACCATGATCAAGCTGATCAGGCTGCAACTTTGTTGAAGGGGATAGAGTCACTTGAAGTTTCAAAGAGGAAATTGTTGGGACAAGGTTTGGGATCAAGCTCTTATGAAGAACTTCAACAAATACAACAGCAGCTTCAAAGGAGCTTAGCCCATGTTCGAGCTACAAAGCATGAGGTTTACAAGGAACAGATTGATCAACTGAAAGAAAAGTATTTGGTTCAACTCGAGCCTCGACAATCATTGACTCAAGTAGGAGAAGTTTCACCGTATCTCGAAACCAGCTTGACTTTCGACGTTGAAACGGATTTGTTCATCGGGCCACCGAAGTCGAGATCGAAGTGA 597 45.9 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCEADVALIIFSSTGKLCEFASSSMQATVERFQRHTRETHHLERSLPHHHDQADQAATLLKGIESLEVSKRKLLGQGLGSSSYEELQQIQQQLQRSLAHVRATKHEVYKEQIDQLKEKYLVQLEPRQSLTQVGEVSPYLETSLTFDVETDLFIGPPKSRSK 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3241950 3246574 - Cp4.1LG08g01730.1 Cpe08g00501 473467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00501 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe08g00501 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe08g00501 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe08g00501 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe08g00501 198 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Cpe08g00501 198 PANTHER MADS BOX PROTEIN 1 194 - -
Cpe08g00501 198 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Cpe08g00501 198 Coils Coil 120 140 - -
Cpe08g00501 198 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Cpe08g00501 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe08g00501 198 Pfam K-box region 89 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe08g00501 198 ProSiteProfiles K-box domain profile. 86 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe08g00501 198 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe08g00501 198 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe08g00501 198 PANTHER MADS-BOX PROTEIN SOC1 1 194 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00501 Cpe17g00324 CCT
Cpe05g00296 Cpe08g00501 CCT
Cpe08g00501 Cpe17g00324 ECH
Cpe08g00501 Cpe13g00187 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00501 Cpe-Chr8:3241950 Cpe17g00324 Cpe-Chr17:2200090 1.32E-63 dispersed
Cpe13g00187 Cpe-Chr13:1468337 Cpe08g00501 Cpe-Chr8:3241950 5.35E-55 wgd
Cpe03g01699 Cpe-Chr3:12926741 Cpe08g00501 Cpe-Chr8:3241950 3.42E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49848 PF01486 K-box 1.50E-16 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00501 - - csv:101209501 256.144