Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00511 ATGAGTTTGGGTTTGGTTTTGTTCCTCCCCTTGAATCTCGTGGTGAAGATCTTCAGATTCAGTGGAAGAAATTGTCCGCTATTCATGTCTGGACTCGAAGATATGCCGGAAAATTGCGTGGCTCTGGTTCTGATGCATATGGACCCGCCGGAGATTTGCAAATTAGCCGGAGTGAACCGACTTTTCCGCGACGCTGCTTCGGCGGATTTCGTATGGGAATCGAAGTTGCCGTCTAATTATCAGTTTCTGATCGACAAAGCCCTGGAGTTCGAGGAGAAAGATAAAGCTATGATGAATTTGAGGAAGAAAGATGTTTATTCTAGGCTTTGTAAACGAAATCCCTTAAATGGCGTCTCGAAGGAGTTTTGGCTCGACAAGAGAACTGGAGGCTTGTCAATGGCGATTTCTTGGAAGGCATTGACGATTACTGGAATTGGTGATCGGAGATATTGGAATCATATCTCAACTGATGAATCTAGATTTCAGTCGATAGCTTATCTTCAACAAACATGGTGGTTCGAGGTGAAGGGAGAGCTGAAGTTCCAGTTCCCAGAAGGAAGATATGCAGTGTTCTTCCGGCTTCATCTCGGCAAACCATCGAAGAGACTCGGTCGTCGGATCTGCCTAATGGATCAAGTCCATGGCTGGGACGTAAAGCCAGTGAGGTTTCAGCTGACGACATCCGATAATCAGCACACCGAGTCACGGTGCTTCTTGGGCAGTCCTGGGAACTGGGTGAACTACCATGTGGGAGATTTCACCATTGAAAGTGGCAGCAGCAGCAGCAACATGATGAAGCTCAAATTCGCATTGACTCAGATTGATTGCACTCACACCAAAGGAGGGCTCTGCCTAGACTCTGTGCTCATACAGCCTAAAGATTTTGTAGCTAAAAACAACAGGTAA 906 46.47 MSLGLVLFLPLNLVVKIFRFSGRNCPLFMSGLEDMPENCVALVLMHMDPPEICKLAGVNRLFRDAASADFVWESKLPSNYQFLIDKALEFEEKDKAMMNLRKKDVYSRLCKRNPLNGVSKEFWLDKRTGGLSMAISWKALTITGIGDRRYWNHISTDESRFQSIAYLQQTWWFEVKGELKFQFPEGRYAVFFRLHLGKPSKRLGRRICLMDQVHGWDVKPVRFQLTTSDNQHTESRCFLGSPGNWVNYHVGDFTIESGSSSSNMMKLKFALTQIDCTHTKGGLCLDSVLIQPKDFVAKNNR 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3302818 3306415 - Cp4.1LG08g01530.1 Cpe08g00511 473477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00511 301 Pfam Phloem protein 2 132 292 IPR025886 -
Cpe08g00511 301 SUPERFAMILY F-box domain 30 110 IPR036047 GO:0005515
Cpe08g00511 301 ProSiteProfiles F-box domain profile. 29 75 IPR001810 GO:0005515
Cpe08g00511 301 SMART fbox_2 35 74 IPR001810 GO:0005515
Cpe08g00511 301 PANTHER F-BOX PROTEIN PP2-A13 30 297 - -
Cpe08g00511 301 PANTHER F-BOX PROTEIN PP2-A15 30 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00511 - - - cmos:111445602 619.772
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01707 Cpe08g00511 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00679 Cpe-Chr5:4137160 Cpe08g00511 Cpe-Chr8:3302818 8.11E-111 dispersed
Cpe08g00511 Cpe-Chr8:3302818 Cpe14g00826 Cpe-Chr14:6689603 1.34E-108 dispersed
Cpe08g00511 Cpe-Chr8:3302818 Cpe03g01707 Cpe-Chr3:12967230 3.05E-179 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g396 . . Bda06g00074 . . Bpe07g00125 . . Cmo06g01134 Cmo16g01048 . . . . . . . . . . . . . . Cla10g00351 Cam10g0363 Cec10g0381 Cco10g0376 Clacu10g0367 Cmu10g1203 Cre10g0618 . . . . Lsi07g01414 . . Cme06g02700 . . . . . . . Bma12g00101 . . . Cma06g01106 Cma16g01005 Car06g00943 . Cpe08g00511 . . . . . . . . . . . . . . . . Csa03g00373 Chy06g01940 .
Vvi15g555 . . . . . . . . . . Cma06g00709 Cma14g02008 Car06g00631 Car14g01810 . Cpe08g00511 Cpe03g01707 . . . . . . . . . . . . . . Cone14ag0330 Cone15ag0359 . . Lsi05g02005 . . Cme06g00212 . . . . . . . . . Cmo06g00726 Cmo14g02069 . . . . . . . . . . . . . . . . . . . . . Csa03g00925 Chy06g00202 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012801 2 0 0 1 0 1 2 1 1 1 0 0 2 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00511 Cpe_Chr08 FPKM 12.049363 12.675877 9.178542 8.98694 11.761782 11.790325 12.513851 8.552379 7.724043 8.645306