Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00516 ATGCGTGATTCAATCCCACTCTACTCTTCCCCCATCCGGACGGTGGATAATTCGCCTCTGCTTGGCTATTCCGTCGCCGATGGATTCTTCCGATCGCGAGGGTTTATTCGTCGTTCGCCTCAGCCTCTTCGTGGTGCGGTTCGTCTTCTCCGCCGTGCAAGTGGCCGGCAGATGATGCTTCAAGAGCCCTCCGTTCGTGTTCGTGAAACCGCCGCCGAGCAGCTGGAGGAACGGCAGAGTGATTGGGCGTACTCGAAGCCGATAATCCTCTTGGACCTTCTATGGAACTTGGTTTTCGTCGCCATTAGTTTCACTATCCTAGGGCTCAGCACGAGCGAAAATCCTTCTGTGCCGCTTAGGTTTTGGATCATCGGATATGCTTTGCAGTGTATAATTCACATGTCCTGTGTTGCAGCTGAGTATAAGCGGCGGCACTTGACGAGAGACCCCGCCAGATTGGAGCGTGGCAGCGACTGGATGAGCGGCGATGACTCGAATTCCGCCTCTGGAAGTGATGGAGATGAAGAACTTACCGTGAATGAAGAAGAACCAAGCAATCTTGTGAAGCATATTGAGTCTGCAAATACCTTGTTCTCTTTCATCTGGTGGCTGCTAGGATTTTACTGGGTCACTACTGGAGGCCAAGAATTGATTGATGATTCACCTCAGCTATACTGGCTTTGTATTACATTCCTTGCTTTCGACGTCGTGTTTGTTCTGATTTGCGTCGCAATTGCCTGTCTTGTTGGTGTTGCTATTTGCTGCTGTCTTCCTTGCATAATTGCTATCTTGTATGCGGTTACCGATCAGGAAGGAGCAACGAAGGAGGAGATCGATCGCTTACCGAAGTACATATTCAACAGAACATGTGATGTTGAGAAAGGGATTGGTGATACTCAAGAATCTACTGGAGGAATAATGACTAAATGTGACACTGATGCACCTACCAAGCATTTTCTTCGCCCCGAAGATTCTGAGTGTAGCATCTGCCTCAGTGCTTACGAAAACGAAACGGAGCTACGAGAGCTGCCCTGTAACCACCATTTCCACTGCAACTGCATCGACAAATGGCTACACATCAATGCAACCTGCCCGCTCTGCAAGTTCAACATATTGAAGCCGAACGGTTCCAGTAGCGAAGAAGTGTGA 1149 49.26 MRDSIPLYSSPIRTVDNSPLLGYSVADGFFRSRGFIRRSPQPLRGAVRLLRRASGRQMMLQEPSVRVRETAAEQLEERQSDWAYSKPIILLDLLWNLVFVAISFTILGLSTSENPSVPLRFWIIGYALQCIIHMSCVAAEYKRRHLTRDPARLERGSDWMSGDDSNSASGSDGDEELTVNEEEPSNLVKHIESANTLFSFIWWLLGFYWVTTGGQELIDDSPQLYWLCITFLAFDVVFVLICVAIACLVGVAICCCLPCIIAILYAVTDQEGATKEEIDRLPKYIFNRTCDVEKGIGDTQESTGGIMTKCDTDAPTKHFLRPEDSECSICLSAYENETELRELPCNHHFHCNCIDKWLHINATCPLCKFNILKPNGSSSEEV 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3336974 3340525 + Cp4.1LG08g01630.1 Cpe08g00516 473482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00516 382 MobiDBLite consensus disorder prediction 155 180 - -
Cpe08g00516 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 375 IPR013083 -
Cpe08g00516 382 SUPERFAMILY RING/U-box 318 374 - -
Cpe08g00516 382 PANTHER TARGET OF ERK KINASE MPK-1 29 378 - -
Cpe08g00516 382 CDD RING-H2_RNF111_like 326 370 - -
Cpe08g00516 382 Pfam Ring finger domain 326 368 IPR001841 -
Cpe08g00516 382 SMART ring_2 327 367 IPR001841 -
Cpe08g00516 382 MobiDBLite consensus disorder prediction 160 174 - -
Cpe08g00516 382 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 29 378 - -
Cpe08g00516 382 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00516 - - - csv:101205399 662.144
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00516 Cpe14g00834 CCT
Cpe03g01711 Cpe08g00516 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00261 Cpe-Chr7:1697248 Cpe08g00516 Cpe-Chr8:3336974 3.22E-46 dispersed
Cpe08g00516 Cpe-Chr8:3336974 Cpe08g00793 Cpe-Chr8:6289601 6.95E-148 dispersed
Cpe11g00569 Cpe-Chr11:3372677 Cpe08g00516 Cpe-Chr8:3336974 1.79E-45 dispersed
Cpe20g00235 Cpe-Chr20:1342753 Cpe08g00516 Cpe-Chr8:3336974 6.17E-13 dispersed
Cpe03g01711 Cpe-Chr3:13000644 Cpe08g00516 Cpe-Chr8:3336974 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g378 . . . . . . . . Cmo06g01129 Cmo16g01058 . . . . . Cpe14g00834 . Bhi11g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g00096 . . . Cma06g01102 . Car06g00939 Car16g00969 Cpe08g00516 . . . . . . . . . . . . . . . . . . .
Vvi15g565 . . . . Bpe14g01000 . . . . . Cma06g01102 Cma14g02015 Car06g00939 Car14g01816 . Cpe08g00516 Cpe03g01711 Bhi01g00407 . . . . . . Cla05g00192 Cam05g0209 Cec05g0210 Cco05g0218 Clacu05g0207 Cmu05g0199 Cre05g0259 . . . Cone18ag1101 Lsi05g02011 . . Cme06g00207 . . . Bda13g00332 . . Bma02g01042 . . Cmo06g01129 Cmo14g02075 . . . Car17g00511 . . . . . . . . . . . . . . . . . Csa03g00920 Chy06g00197 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000993 3 3 3 3 3 2 4 2 2 2 2 2 4 2 2 3 2 3 4 2 2 3 2 2 3 2 2 7 6 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00516 Cpe_Chr08 FPKM 22.861094 25.299488 25.20849 27.307901 17.82291 14.894045 18.078239 32.046928 29.46677 30.635298