Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00529 ATGAACAATAGAGGAAGGTATCCTCCTGGGATCGGTGCTGGACGAGGCGGAGGCGTGAATGCGAATCCTTCGTTTCAGTCAAGACCACATCAGCAGCAATATGTACAAAGAAATTTGGTACCGAATCAGCAGTATCAACAACAGCAGCACCAGAACCAGAACCAGAATCAGAACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAACATCAACACCAAAACCAGCAGCTTCAACAACAACAACAGTGGCTGAAAAGGAACCAGTTAGGTGGCGGTCATGCTGATTCCAACGTTGACGAGGTGGAGAAGACCGTGCAGTCGGAGGCTGTTGACTCGAGTTCACAAGATTGGAAGGCTAGGTTAAAGATTCCACCACCTGATACACGATATAAAACAGAGGATGTGACGGCTACCAAAGGAAATGAATTTGAGGACTATTTTCTAAAACGTGAATTACTCATGGGAATCTATGAGAAAGGCTTTGAAAGACCATCTCCTATTCAAGAAGAAAGTATTCCGATTGCTTTAACTGGTAGTGATATTCTTGCAAGAGCGAAGAACGGAACTGGAAAGACAGCTGCATTTTGCATTCCCGCCTTAGAAAAGATTGATCAGGATAACAATGTAATCCAAGTTGTTATCCTCGTTCCAACTCGAGAGTTGGCTCTTCAAACTTCACAAGTGTGTAAGGAACTCGGAAAGAATTTGAATATTCAAGTTATGGTTACAACAGGTGGTACCAGTTTAAAGGATGATATCATGCGACTATACCAACCAGTTCATTTATTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAAAAGGGTGTTTGTGTACTGAAAGATTGTTCTATGCTTATCATGGATGAGGCTGACAAGCTCTTGTCTCCAGAGTTCCAACCCTCAATAGAGCAGTTGATACGCTTTTTGCCTGCAAATCGGCAGGTTCTTATGTATTCCGCTACCTTTCCTGTTACTGTGAAGGACTTCAAAGATAGATATCTTCACAGGCCCTATATTATAAACTTAATGGACGAGCTCACTCTAAAGGGTATCACCCAATTCTATGCATTTGTTGAAGAAAGACAAAAAGTGCACTGCCTTAATACTCTTTTCTCTAAGCTGCAAATTAACCAGTCAATTATCTTCTGCAATTCGGTAAATCGAGTTGAGTTGTTAGCCAAAAAAATTACAGAACTTGGTTATTCTTGTTTCTATATTCATGCAAAGATGCTGCAAGATCATCGTAACAGAGTATTTCATGACTTCCGAAATGGTGCATGCAGAAATCTCGTTTGTACTGATTTATTTACAAGAGGAATAGACATTCAAGCAGTAAACGTTGTTATTAACTTCGATTTCCCCAAGAATTCAGAGACGTATCTACACAGGGTGGGACGATCTGGAAGGTTTGGACACCTTGGGTTAGCTGTGAATTTAATCACCTATGAGGATCGTTTCAATTTGCAATCTACTGCCGGTAATTTGTGGTGGGCATTGGATCCCAGGGTAAACAATTGGCAGCAGGTCAATGAAGAAGCTCTTTGGAGAGAGAGGCTTGTTTTCTGA 1578 41.83 MNNRGRYPPGIGAGRGGGVNANPSFQSRPHQQQYVQRNLVPNQQYQQQQHQNQNQNQNQHQHQHQHQHQHQHQHQNQQLQQQQQWLKRNQLGGGHADSNVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKNLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLIMDEADKLLSPEFQPSIEQLIRFLPANRQVLMYSATFPVTVKDFKDRYLHRPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLQSTAGNLWWALDPRVNNWQQVNEEALWRERLVF 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3428920 3435158 + Cp4.1LG08g01510.1 Cpe08g00529 473495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00529 525 Pfam Helicase conserved C-terminal domain 369 475 IPR001650 -
Cpe08g00529 525 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 3 497 - -
Cpe08g00529 525 MobiDBLite consensus disorder prediction 1 84 - -
Cpe08g00529 525 Gene3D - 348 501 IPR027417 -
Cpe08g00529 525 Gene3D - 101 347 IPR027417 -
Cpe08g00529 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 491 IPR027417 -
Cpe08g00529 525 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 290 298 IPR000629 -
Cpe08g00529 525 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 344 IPR014001 -
Cpe08g00529 525 Pfam DEAD/DEAH box helicase 168 332 IPR011545 GO:0003676|GO:0005524
Cpe08g00529 525 SMART helicmild6 394 475 IPR001650 -
Cpe08g00529 525 MobiDBLite consensus disorder prediction 20 62 - -
Cpe08g00529 525 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 3 497 - -
Cpe08g00529 525 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Cpe08g00529 525 MobiDBLite consensus disorder prediction 104 134 - -
Cpe08g00529 525 CDD SF2_C_DEAD 355 484 - -
Cpe08g00529 525 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 518 IPR001650 -
Cpe08g00529 525 CDD DEADc_DDX6 145 345 - -
Cpe08g00529 525 SMART ultradead3 162 358 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00529 K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13] - csv:101203201 863.988
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g01722 Cpe08g00529 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00219 Cpe-Chr3:1091527 Cpe08g00529 Cpe-Chr8:3428920 5.26E-55 dispersed
Cpe07g00294 Cpe-Chr7:1917391 Cpe08g00529 Cpe-Chr8:3428920 5.17E-70 dispersed
Cpe08g00529 Cpe-Chr8:3428920 Cpe11g00330 Cpe-Chr11:1758701 5.91E-77 dispersed
Cpe03g01722 Cpe-Chr3:13059769 Cpe08g00529 Cpe-Chr8:3428920 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g348 . . . . . . . . Cmo06g01115 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00080 Chy09g01411 . . . . . . . . . . . . Cma06g01089 . Car06g00924 . Cpe08g00529 . . . . . . . . Cla01g00071 Cam01g0070 Cec01g0071 Cco01g0071 Clacu01g0071 Cmu01g0072 Cre09g2437 Lsi09g00051 . . Cme09g01955
Vvi15g916 . . . . Bpe14g00974 . . . . . Cma06g01089 Cma14g02025 Car06g00924 Car14g01834 . Cpe08g00529 Cpe03g01722 Bhi01g00374 . . . . . . Cla05g00180 Cam05g0194 Cec05g0193 Cco05g0203 . Cmu05g0184 Cre05g0244 Cone14ag0345 . Cone11ag0414 Cone18ag1092 Lsi05g02028 . . Cme06g00191 Blo02g00351 . . Bda13g00354 . . Bma02g01063 . . Cmo06g01115 Cmo14g02087 . . . . . . . . . . . . . . . . . . . . . Csa03g00903 Chy06g00183 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004275 2 1 2 2 2 1 2 1 1 1 1 0 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00529 Cpe_Chr08 FPKM 2.160987 2.588387 0.317146 0.425854 5.827515 6.453096 4.983112 1.004736 0.988335 0.969574