Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g00538 | ATGTCAATATATGATTCCTCATTCTTTAACACGGCGCTCTCTAAACGGACCTCCATTTTCGGCCTTCATCTCTGGGTTGTAATCGGAATCGTAGTCGGAGCCTTAATAGTTCTCGCACTGTTTCTTCTTTCACTTTGTCTCACTTCTCGCAAGCGGAATCGCCATAAGAACAAAATCCGTTTCCCTAAATCCACAGCCGACCATTCTCCTCCCATTTCGAAAGAAATCCAGGAAATCGTCCATAACGCGGTACCGGATCATCACCACCATGTGCAGCCGGAGATTCATGTCGAGATCGGAAAATTGGAGCATCGAGTTGTTTTCTCTGATAGGCCGTCTAGCGGGGAGAGCAGAGGCGCTGTGAGTGAAACTGCTTCTCTTGGATCTGGTACTGTTGGGCCTGAAGTTTCGCATCTTGGTTGGGGCAGATGGTATACTCTTAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAACGTGATTGGAGAAGGTGGGTATGGGATCGTGTATTTAGGCACTTTGGGAGATGGTACAAGAATTGCTATCAAGAACCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTTAAAGTCGAAGTTGAAGCAATTGGAAGAGTAAGACACAAGAATCTTGTCAGGCTGCTTGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTACGAGTACGTTAACAATGGCAATCTAGATCAGTGGCTTCATGGCGACGTCGGGGATGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTCGGAACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGTGATGTAAAATCTAGCAACATATTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTAGCCAAGCTTCTTTGTTCCGAAAGGAGCTATGTGACGACTCGTGTAATGGGTACATTTGGGTTAGTGAATTTGGTGGATTGGTTGAAAGCAATGGTTGGAGATAGAAGATCCGAGGAAGTGGTTGACCTCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTAAAACGTGTTCTGCTGGTCGCTCTTCGGTGTGTCGATCCTGATGCTTCGAAGAGGCCGAAAATGGGACATGTCATCCACATGCTTGAGGCAGATAATTTGCTGTCTAATGATGAATACCGGGTCGGTAAGGATGCTTCTCATTCAACTCAAGGTCATCAACACGGTCTGAGACGAGTTAACCATCAGAAAGACGAAGGAACATGTTCTAATATAAGTGATGGTGACAGTGATGGAAACATTCAACATCCAAGTAGGTGGAGATAA | 1338 | 46.04 | MSIYDSSFFNTALSKRTSIFGLHLWVVIGIVVGALIVLALFLLSLCLTSRKRNRHKNKIRFPKSTADHSPPISKEIQEIVHNAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGAVSETASLGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGTLGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGLVNLVDWLKAMVGDRRSEEVVDLKLPEKPPSKALKRVLLVALRCVDPDASKRPKMGHVIHMLEADNLLSNDEYRVGKDASHSTQGHQHGLRRVNHQKDEGTCSNISDGDSDGNIQHPSRWR | 445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3513694 | 3517472 | + | Cp4.1LG08g01370.1 | Cpe08g00538 | 473504 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g00538 | 445 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 324 | 403 | - | - | |
Cpe08g00538 | 445 | SUPERFAMILY | Protein kinase-like (PK-like) | 136 | 387 | IPR011009 | - | |
Cpe08g00538 | 445 | ProSiteProfiles | Protein kinase domain profile. | 157 | 445 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe08g00538 | 445 | SMART | serkin_6 | 157 | 386 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe08g00538 | 445 | Gene3D | Transferase(Phosphotransferase) domain 1 | 233 | 325 | - | - | |
Cpe08g00538 | 445 | Gene3D | Transferase(Phosphotransferase) domain 1 | 326 | 402 | - | - | |
Cpe08g00538 | 445 | PANTHER | OS01G0323000 PROTEIN | 324 | 403 | - | - | |
Cpe08g00538 | 445 | PANTHER | OS01G0323000 PROTEIN | 2 | 326 | - | - | |
Cpe08g00538 | 445 | Pfam | Protein kinase domain | 160 | 322 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe08g00538 | 445 | Gene3D | Phosphorylase Kinase; domain 1 | 132 | 232 | - | - | |
Cpe08g00538 | 445 | MobiDBLite | consensus disorder prediction | 401 | 445 | - | - | |
Cpe08g00538 | 445 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 279 | 291 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe08g00538 | 445 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 2 | 326 | - | - | |
Cpe08g00538 | 445 | MobiDBLite | consensus disorder prediction | 401 | 428 | - | - | |
Cpe08g00538 | 445 | ProSitePatterns | Protein kinases ATP-binding region signature. | 163 | 185 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00538 | Cpe-Chr8:3513694 | Cpe10g00441 | Cpe-Chr10:2576118 | 4.84E-170 | dispersed | |
Cpe14g00085 | Cpe-Chr14:464296 | Cpe08g00538 | Cpe-Chr8:3513694 | 9.48E-76 | wgd | |
Cpe08g00538 | Cpe-Chr8:3513694 | Cpe09g00068 | Cpe-Chr9:401104 | 2.20E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62549 | PF00069 | Pkinase | 2.50E-31 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g00538 | - | - | csv:101219288 | 773.081 |