Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00538 ATGTCAATATATGATTCCTCATTCTTTAACACGGCGCTCTCTAAACGGACCTCCATTTTCGGCCTTCATCTCTGGGTTGTAATCGGAATCGTAGTCGGAGCCTTAATAGTTCTCGCACTGTTTCTTCTTTCACTTTGTCTCACTTCTCGCAAGCGGAATCGCCATAAGAACAAAATCCGTTTCCCTAAATCCACAGCCGACCATTCTCCTCCCATTTCGAAAGAAATCCAGGAAATCGTCCATAACGCGGTACCGGATCATCACCACCATGTGCAGCCGGAGATTCATGTCGAGATCGGAAAATTGGAGCATCGAGTTGTTTTCTCTGATAGGCCGTCTAGCGGGGAGAGCAGAGGCGCTGTGAGTGAAACTGCTTCTCTTGGATCTGGTACTGTTGGGCCTGAAGTTTCGCATCTTGGTTGGGGCAGATGGTATACTCTTAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAACGTGATTGGAGAAGGTGGGTATGGGATCGTGTATTTAGGCACTTTGGGAGATGGTACAAGAATTGCTATCAAGAACCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTTAAAGTCGAAGTTGAAGCAATTGGAAGAGTAAGACACAAGAATCTTGTCAGGCTGCTTGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTACGAGTACGTTAACAATGGCAATCTAGATCAGTGGCTTCATGGCGACGTCGGGGATGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTCGGAACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGTGATGTAAAATCTAGCAACATATTGCTTGATCGTCAGTGGAATGCTAAAGTATCTGATTTTGGGCTAGCCAAGCTTCTTTGTTCCGAAAGGAGCTATGTGACGACTCGTGTAATGGGTACATTTGGGTTAGTGAATTTGGTGGATTGGTTGAAAGCAATGGTTGGAGATAGAAGATCCGAGGAAGTGGTTGACCTCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTAAAACGTGTTCTGCTGGTCGCTCTTCGGTGTGTCGATCCTGATGCTTCGAAGAGGCCGAAAATGGGACATGTCATCCACATGCTTGAGGCAGATAATTTGCTGTCTAATGATGAATACCGGGTCGGTAAGGATGCTTCTCATTCAACTCAAGGTCATCAACACGGTCTGAGACGAGTTAACCATCAGAAAGACGAAGGAACATGTTCTAATATAAGTGATGGTGACAGTGATGGAAACATTCAACATCCAAGTAGGTGGAGATAA 1338 46.04 MSIYDSSFFNTALSKRTSIFGLHLWVVIGIVVGALIVLALFLLSLCLTSRKRNRHKNKIRFPKSTADHSPPISKEIQEIVHNAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGAVSETASLGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGTLGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGLVNLVDWLKAMVGDRRSEEVVDLKLPEKPPSKALKRVLLVALRCVDPDASKRPKMGHVIHMLEADNLLSNDEYRVGKDASHSTQGHQHGLRRVNHQKDEGTCSNISDGDSDGNIQHPSRWR 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3513694 3517472 + Cp4.1LG08g01370.1 Cpe08g00538 473504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00538 445 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 324 403 - -
Cpe08g00538 445 SUPERFAMILY Protein kinase-like (PK-like) 136 387 IPR011009 -
Cpe08g00538 445 ProSiteProfiles Protein kinase domain profile. 157 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00538 445 SMART serkin_6 157 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00538 445 Gene3D Transferase(Phosphotransferase) domain 1 233 325 - -
Cpe08g00538 445 Gene3D Transferase(Phosphotransferase) domain 1 326 402 - -
Cpe08g00538 445 PANTHER OS01G0323000 PROTEIN 324 403 - -
Cpe08g00538 445 PANTHER OS01G0323000 PROTEIN 2 326 - -
Cpe08g00538 445 Pfam Protein kinase domain 160 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00538 445 Gene3D Phosphorylase Kinase; domain 1 132 232 - -
Cpe08g00538 445 MobiDBLite consensus disorder prediction 401 445 - -
Cpe08g00538 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Cpe08g00538 445 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 326 - -
Cpe08g00538 445 MobiDBLite consensus disorder prediction 401 428 - -
Cpe08g00538 445 ProSitePatterns Protein kinases ATP-binding region signature. 163 185 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00538 Cpe-Chr8:3513694 Cpe10g00441 Cpe-Chr10:2576118 4.84E-170 dispersed
Cpe14g00085 Cpe-Chr14:464296 Cpe08g00538 Cpe-Chr8:3513694 9.48E-76 wgd
Cpe08g00538 Cpe-Chr8:3513694 Cpe09g00068 Cpe-Chr9:401104 2.20E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62549 PF00069 Pkinase 2.50E-31 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00538 - - csv:101219288 773.081