Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00548 ATGATCAGCTCACGCAGAGAGATTGTAGAAGAGCCAGTAAGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAATGCTTATCAGTTTTGAGGTATGCACTAAAATCTTCACATGGGAAGAAGATTTTCCTCCTCCATGTTCATGTCCCTGCACAGATGATTCCATTAATGGGAACCAAATTTCCAGCGAACTCATTGCAGAAAGAGGAAGTGAGAGCATATCATGAGTTCGAGAAGCAAAATTTGCGGAGGATCATGAATGAGTATATTCTGCACTGTCTTCAAGAAGGGGTTCAAGCTGAAAGATTATGTGCTGAAGCTGAGAGTATCGAAAAGGGAATAGTTGATATGATTTCCCTGCACGGTATTAAAAAGCTTGTTATGGGAGCAGCTGTAGACAAGTGCTATTCGAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCTTTTATGTGCGCTCACAGGCACTTGCTTCTTGTCACATTGAGTTTATCTGCAAGGGGAACCTCATCTGCACCAGAGTCTATCTTGAAGTTTGTTATCTTAGACTTGGTAATCTGATTGATGCGAGTACCAGGGAGGGTAGATCGGATGGAGCTCAAGTAGAAGCTACAGTTACATCGCCACAAACAAGTCCAGACGATGAGGCCCCGGAAATTTCCCAATGCAGATCTCAGTCACGTCCATTGGAGCAGGTTAACAGCAGGGAAGTCGGGAGTCCATCTTCGGATTTACGTTTTAGAGGGAGATCATTGCTTGTTGACCATTTTAGAGAAAGCATAGTAGATCCTTCCCCTTCTCCAAATATTATGAACGGGGATCGAACTGCAAGAAGCTTGGACGTTAATGAGACTTTTGATGAATTGAGTTTATTGGAAAGGAGAAGTCCATATGAAAGGTCAGAAAATTCCTTACGCTCTCCTCGTGGCGTGATCGACATGGCTCCTTCTCCACTTTCCAGGGTCGAGTTATGTGAAAATGGGCTGGAGGATGGGAAAACCAGTGCTTACCTTTACAATCAATATGAACGGGTGATGATGGAGGCTACAAACGCAAGGCGCGACGCATTTTTAGAGGCAATTGCGCGTAGAAAATATGAGAAAGAGGCCGTTAATGCTCTATGCAAGGTTAAAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAACTAGCAAGAGAAAAGGCTAAACTTGAAAGCATAAAGAAGCAACTAAATGAAGAGATGGAAGAGCTCCGGATAGCCCAAGATCAGAAGGCAAGCCTTGAGAGAGAACTTTTGGAATCTGATCTGACGGTGAAGGAGTTGGAGCAAAGGATTCTTTCTGCTGTTGAATTGTTACAAAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATTCAACGCGACAATGCACTTACGGAAGCAGAGGAGCTTAGAAAAAATCAACTCGCAGGCACGATCCTTCCGCAGTTCTTTACGGAGTTTCCGTTTCGGGAGATCGAGGAAGCTACTAGAAACTTCGATCCCTCCCTGAAGATCGGAGAAGGCGGATATGGGAGCATATATAAAGGCTTCTTGCGCCATACCATGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTTTTAAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGAGCTTGTCCCGAAGCATGGGTTCTCGTCTACGAATACCTCTGTAACGGAAGCCTCGAGGATAAGCTCAGCTGCAAGAACAATACTCCACCTTTACCTTGGCAAACACGAATACGCATCGCTACTGAGTTATGCTCGGCCATTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCTAACTTTGTATGCAAGCTCAGTGACTTTGGAATTTGTCGCTTATTGTCTCGGGATGAAACGCCGAACGACAATGAAACACTTGTTTGGAGAACTGACAATCCCAAGGGAACTTTTCCTTACATGGATCCTGATTATCTTTCGTCTGGAGAGCTAACGACGAAGTCGGATGTTTATTCGTTCGGGATTATACTGTTACGATTGTTAACTGGTAGATCTGCAATAGGGATATCAAAGGAAGTCCAATATGCAGTGGGAAATGGAAAGTTAAAATCCATTTTGGATCCTTTAGCGGGCGATTGGCCATTCGTGCAGGCTGAACAGCTCGCTCGATTGGCCTTGAGGTGTTGTGATATGAACCGAAAGAGTCGCCCCGATCTCATTACAGATGTCTGGAGGGTGCTTGGACCAATGAGAGCTTCCTGTGGAGGCCTATTGTCCATCCAACTCGGTTCGTCCGAACACTTGCAACCTCCCCCTTACTTTATCTGTCCCATCTTTCAGGAAGTCATGCTGGATCCACATGTGGCTGCAGATGGTTTTACGTACGAAGCAGAGGCGGCAAGAGGATGGCTAGACAGTGGACATGATACTTCGCCGATGACGAATCTTAGGCTCGAGCACCGCAACCTCGTCCCCAACCGTGCTCTTCGTTCGGCTATACAGGAATGGCTCCAAAGGAACTGA 2616 45.03 MISSRREIVEEPVRAISEDVICVAVGKDVKECLSVLRYALKSSHGKKIFLLHVHVPAQMIPLMGTKFPANSLQKEEVRAYHEFEKQNLRRIMNEYILHCLQEGVQAERLCAEAESIEKGIVDMISLHGIKKLVMGAAVDKCYSRRMVDLKSKKAFYVRSQALASCHIEFICKGNLICTRVYLEVCYLRLGNLIDASTREGRSDGAQVEATVTSPQTSPDDEAPEISQCRSQSRPLEQVNSREVGSPSSDLRFRGRSLLVDHFRESIVDPSPSPNIMNGDRTARSLDVNETFDELSLLERRSPYERSENSLRSPRGVIDMAPSPLSRVELCENGLEDGKTSAYLYNQYERVMMEATNARRDAFLEAIARRKYEKEAVNALCKVKAAEGLYAEELKQRKEVEQELAREKAKLESIKKQLNEEMEELRIAQDQKASLERELLESDLTVKELEQRILSAVELLQSYKREREELQIQRDNALTEAEELRKNQLAGTILPQFFTEFPFREIEEATRNFDPSLKIGEGGYGSIYKGFLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLVYEYLCNGSLEDKLSCKNNTPPLPWQTRIRIATELCSAIMFLHSSKPHSIIHGDLKPANVLLDANFVCKLSDFGICRLLSRDETPNDNETLVWRTDNPKGTFPYMDPDYLSSGELTTKSDVYSFGIILLRLLTGRSAIGISKEVQYAVGNGKLKSILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDVWRVLGPMRASCGGLLSIQLGSSEHLQPPPYFICPIFQEVMLDPHVAADGFTYEAEAARGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3585977 3592106 - Cp4.1LG08g01320.1 Cpe08g00548 473514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00548 871 SMART Ubox_2 804 867 IPR003613 GO:0004842|GO:0016567
Cpe08g00548 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Cpe08g00548 871 Pfam Protein kinase domain 517 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00548 871 Pfam U-box domain 802 871 IPR003613 GO:0004842|GO:0016567
Cpe08g00548 871 ProSiteProfiles Protein kinase domain profile. 512 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00548 871 Coils Coil 382 486 - -
Cpe08g00548 871 MobiDBLite consensus disorder prediction 200 249 - -
Cpe08g00548 871 ProSiteProfiles U-box domain profile. 800 871 IPR003613 GO:0004842|GO:0016567
Cpe08g00548 871 SUPERFAMILY Protein kinase-like (PK-like) 491 770 IPR011009 -
Cpe08g00548 871 CDD STK_N 20 173 - -
Cpe08g00548 871 PANTHER OS02G0152300 PROTEIN 16 867 - -
Cpe08g00548 871 Gene3D Phosphorylase Kinase; domain 1 493 584 - -
Cpe08g00548 871 SUPERFAMILY RING/U-box 795 871 - -
Cpe08g00548 871 CDD RING-Ubox_WDSUB1_like 805 846 - -
Cpe08g00548 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 800 871 IPR013083 -
Cpe08g00548 871 SMART serkin_6 512 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00548 871 MobiDBLite consensus disorder prediction 206 246 - -
Cpe08g00548 871 Gene3D Transferase(Phosphotransferase) domain 1 585 784 - -
Cpe08g00548 871 ProSitePatterns Protein kinases ATP-binding region signature. 518 539 IPR017441 GO:0005524
Cpe08g00548 871 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 16 867 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01237 Cpe-Chr2:11117778 Cpe08g00548 Cpe-Chr8:3585977 1.90E-16 dispersed
Cpe05g00919 Cpe-Chr5:6035511 Cpe08g00548 Cpe-Chr8:3585977 1.05E-116 dispersed
Cpe08g00548 Cpe-Chr8:3585977 Cpe12g00371 Cpe-Chr12:2638981 0 dispersed
Cpe14g00102 Cpe-Chr14:555543 Cpe08g00548 Cpe-Chr8:3585977 2.43E-12 dispersed
Cpe19g00732 Cpe-Chr19:5682193 Cpe08g00548 Cpe-Chr8:3585977 4.73E-09 transposed
Cpe03g01733 Cpe-Chr3:13138432 Cpe08g00548 Cpe-Chr8:3585977 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62551 PF00069 Pkinase 3.80E-41 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00548 - - csv:101211387 1415.98