Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00557 ATGGTTGCGGCGCCAGAAAATTCCGATTCCTCTCCTGCTTCAGTGCCGCCGCCGGCGTCAGTTGAGGATAAGGAGAAAGCCTTGGTTCCAGTGCCAGTCTCTAATAAAACCAAAGAAGATTCTGTACCAAAGAAAGCCTCCGGTGGATCAATTGACAGGGATATCGCTCTTGCGGAGGTTGAAAAGGAGAAAAGGTTTTCCTTCATCAAGGCCTGGGAAGATAGTGAAAAATCAAAGGCTGAGAACAAGGCACAGAAGAAGCTCTCTGCTGTTTCTGCATGGGAGAACAGCAAAAAAGCCAACCTTGAAGCAAAGTTGAAAAAAATTGAGGAACAATTGGAGAAGAAAAAGGCTGAATATGGAGAAAAAATGAAAAACAAAGTAGCCATCATTCACAAAGAAGCAGAAGAAAAGAAGGCAACGGTGGAAGCGCAACGGTCGGAGGAGCTGCTAAAGGCGGAGGAGACGGCTGCCAAATTCCGAGCAACCGGAACCATCCCAAAGAAATTTTTGGGATGTTTTTAA 525 45.71 MVAAPENSDSSPASVPPPASVEDKEKALVPVPVSNKTKEDSVPKKASGGSIDRDIALAEVEKEKRFSFIKAWEDSEKSKAENKAQKKLSAVSAWENSKKANLEAKLKKIEEQLEKKKAEYGEKMKNKVAIIHKEAEEKKATVEAQRSEELLKAEETAAKFRATGTIPKKFLGCF 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3662266 3665902 + Cp4.1LG08g01210.1 Cpe08g00557 473523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00557 174 Pfam Remorin, C-terminal region 65 169 IPR005516 -
Cpe08g00557 174 MobiDBLite consensus disorder prediction 1 51 - -
Cpe08g00557 174 PANTHER CARBOXY-TERMINAL REGION REMORIN 13 174 - -
Cpe08g00557 174 Coils Coil 132 152 - -
Cpe08g00557 174 Pfam Remorin, N-terminal region 12 60 IPR005518 -
Cpe08g00557 174 PANTHER OS02G0117200 PROTEIN 13 174 - -
Cpe08g00557 174 Coils Coil 92 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00557 - - - csv:101203690 280.411
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00657 Cpe08g00557 CCT
Cpe05g00657 Cpe08g00557 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01040 Cpe-Chr2:9608247 Cpe08g00557 Cpe-Chr8:3662266 3.33E-09 dispersed
Cpe05g00317 Cpe-Chr5:1770702 Cpe08g00557 Cpe-Chr8:3662266 4.95E-53 dispersed
Cpe08g00557 Cpe-Chr8:3662266 Cpe09g00093 Cpe-Chr9:534309 1.86E-43 dispersed
Cpe08g00557 Cpe-Chr8:3662266 Cpe05g00657 Cpe-Chr5:4001147 1.26E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g347 . . . . . . . . Cmo06g01081 . Cma02g01472 . Car02g01233 . . . Cpe05g00657 . . . . . . . . . . . . . . . Cone12ag0317 . Cone9ag0765 . . Chy09g01204 . . . . . . Bpe11g00655 . . . Cmo02g01507 . Cma06g01060 . Car06g00892 . Cpe08g00557 . Bhi12g00226 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Lsi09g00282 . . Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009541 2 0 1 0 1 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00557 Cpe_Chr08 FPKM 10.372169 9.333117 11.529074 13.40415 7.026083 6.443756 6.40845 13.020119 11.258879 12.520339