Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00573 ATGGGCACTAGTGAAGAGGCCAAGGCTGTGAAGTCTGAAAAACCATCTTCACCAACGCAGGATCAGAACAATGGGTCAAATTCGGCCAGTATTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAATTCTGCTGTGGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGGCCCACCACAGATGATTCCTCCATATGGCACTCCCTATGCAGCAATCTATTCTCATGGAGGTGTTTATGCACATCCTGCAGTTTCTATGGGACCACATTCACATGGCCCTGGTGTTCCCTCATCACCTGCTCCTGCTGTAACTCCTTTGAGCATTGAAACACCTTCAAAGGTGTCTGGAAACAGTAGTCAAGGTTTAATGAAGAAACTGAAAGGTTTCGACGGCCTGGCAATGTCTATCGGCAATGTTAATACTGAGAGTGCTGATGGGCCCAGTGAGCACGGACAATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTGCTGGGGCAAATCAAACCAAAAGGAAAAGAAGCCGTGAGGGCACACCTACCACTGGTAAAGATGCAAAAATTGAGACACAAGGAAGTCCAGTTACTCCTGCTGAAATGAACGAAAGCTCTAGCAAGTTATTGGGTATAACCAAAGCAGCTGATGCAACTGGAAAGCTTGGATCTGTGATTTCTCCTGGAATGTCTACAGCTTTGGAACTTAGGAATCCTTCTAGTATGAACACCATTTCAGGTCCAACGAGCGTCCCACCATGTTCGGTATTGCCTTCTGAAGTCTGGCTACAGAATGAAAAAGAACTAAAACGGGAAAGGAGAAAACAGTCGAATAGAGAATCCGCTAGGAGATCGAGGTTAAGGAAGCAGGCTGAGACTGAAGAACTAGCTCATAAAGTCGATTCACTGACTGCGGAGAACGTCGCTATTAGATCTGAAATAAGTAGATTGTCGGAGAATTCCGAGAAACTTAAGCAAGAAAACGCTACATTGATGGAGAAGCTTAAAAGCGCTCAATCAGGTCGAACAGAAGCATTAGACATGAACGAAAAAAGGACGCAACATCTTGTAAGCACAGACATCAAAGGACCTGTGAACAAAAGCATTAACGAAGAGAGTAACATCTGCAAGAAGAAATCGAGTTCGGGAGCAAAGTTGCGTCAACTCTTGGACACGAATCCAAGGGCCGACTGCGTCGCTGCCAGCTAA 1257 45.74 MGTSEEAKAVKSEKPSSPTQDQNNGSNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWGPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPAPAVTPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVNTESADGPSEHGQSESMETEGSSDGSDGTTAGANQTKRKRSREGTPTTGKDAKIETQGSPVTPAEMNESSSKLLGITKAADATGKLGSVISPGMSTALELRNPSSMNTISGPTSVPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELAHKVDSLTAENVAIRSEISRLSENSEKLKQENATLMEKLKSAQSGRTEALDMNEKRTQHLVSTDIKGPVNKSINEESNICKKKSSSGAKLRQLLDTNPRADCVAAS 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3745256 3750489 - Cp4.1LG08g01060.1 Cpe08g00573 473539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00573 418 MobiDBLite consensus disorder prediction 1 30 - -
Cpe08g00573 418 MobiDBLite consensus disorder prediction 375 404 - -
Cpe08g00573 418 MobiDBLite consensus disorder prediction 150 187 - -
Cpe08g00573 418 Pfam bZIP transcription factor 282 344 IPR004827 GO:0003700|GO:0006355
Cpe08g00573 418 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 289 304 IPR004827 GO:0003700|GO:0006355
Cpe08g00573 418 Coils Coil 316 357 - -
Cpe08g00573 418 Gene3D - 285 339 - -
Cpe08g00573 418 MobiDBLite consensus disorder prediction 13 30 - -
Cpe08g00573 418 SUPERFAMILY Leucine zipper domain 285 342 IPR046347 GO:0003700|GO:0006355
Cpe08g00573 418 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 418 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cpe08g00573 418 MobiDBLite consensus disorder prediction 202 225 - -
Cpe08g00573 418 MobiDBLite consensus disorder prediction 150 225 - -
Cpe08g00573 418 Pfam Disordered region downstream of MFMR 133 261 - -
Cpe08g00573 418 MobiDBLite consensus disorder prediction 283 314 - -
Cpe08g00573 418 PANTHER G-BOX-BINDING FACTOR 3 1 418 - -
Cpe08g00573 418 CDD bZIP_plant_GBF1 287 335 IPR045314 GO:0003700|GO:0006355
Cpe08g00573 418 MobiDBLite consensus disorder prediction 352 418 - -
Cpe08g00573 418 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 284 347 IPR004827 GO:0003700|GO:0006355
Cpe08g00573 418 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Cpe08g00573 418 MobiDBLite consensus disorder prediction 101 134 - -
Cpe08g00573 418 MobiDBLite consensus disorder prediction 251 269 - -
Cpe08g00573 418 SMART brlzneu 282 346 IPR004827 GO:0003700|GO:0006355
Cpe08g00573 418 MobiDBLite consensus disorder prediction 116 134 - -
Cpe08g00573 418 MobiDBLite consensus disorder prediction 251 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01772 Cpe-Chr3:13355838 Cpe08g00573 Cpe-Chr8:3745256 0 dispersed
Cpe08g00573 Cpe-Chr8:3745256 Cpe10g00596 Cpe-Chr10:3491811 2.59E-52 dispersed
Cpe03g01771 Cpe-Chr3:13351625 Cpe08g00573 Cpe-Chr8:3745256 1.85E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49853 PF16596 MFMR_assoc 1.30E-21 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00573 K09060 - csv:101213720 680.248