Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00597 ATGGTTAGAGGAGGAGGAGGAGGGGAGGAGGAGGAGGAGGGGAGGAGGAGCGGCAGAGCAAAGAGCAGAGGAGAAAAAACAGAAACCCATTTCCCAAAATTTTCCATTTCCATTTTCGATTCTTCATCGTTCTGGAAAACAGAGAAAGAAGAGTCAAAGAGGGCTGTCGCTTTCCTGGGAATGTTTATAGCCTTCCAACTTTCTTTCAAACCTCTTCCCTCATCGCATCGTCTTCTTTTCAGCGCATTTCGTTTGCTCAGTACCGAGATGAAGATTGAAGATGGGTTGCGGGGTGTGGGTGGGAAGGATGAGGATAAGACTGTGGTGGCTGCTGTTTTGGGTACTCGTGCTTTTAATTACATGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCTGTGAGGAATGATGATAATTTGCAGAACAAGCTTGCGGATCTGGTAGAGACACCCAACGCTTCTAATTTTTGTTGGAATTATGCAATTTTCTGGCAACTTTCCCATTCAAAATCTGGTCAATGGGTTTTGGGATGGGGAGATGGATCGTTTAGGGATCCTAGGGATGGTGAAGGAACAGAAGCTACGCAGATTCTTAGCCTTGAGCTTGAAGATGAGAGCCAACAAAGGATGAAGAAAAGGGCATTGCAGAAGCTTCATACACTGTTTGGTGGGTCTGATGAGGATAATTATGCTCTTGGATTGGATAGAGTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTACTTCTCCTTTCCTGGTGGAGAGGGGGGTCCTGGGAAGTGTTTCGCTTCTGGGAAACATGTCTGGCATTTGGATGTGCTCAATTCGCCTGCTGAGTATTGTGTGAGGTCCTATCTGGCTAAGTCGGCTGGGATTCGGACCGTCGTTTTGGTGCCAACTGATGTTGGAGTAGTTGAATTGGGTTCTGTGAGATCTGTGAGTGAGAGCTTAGAGTTGGTGCATTTGATTCGATCGTTGTTTTCATCTCAACGTTCGCTTGATGGAGTGAGGACATCGGCTGTGATGTCGAGGATGGCTGAAAGGAAGGATGAAAACGCCCCATTTCCAAGTTTGGGGATTGCAGAAAGAGGAGGGGGGGTTCCTAAGGTTTTTGGGCAGAGTTTGAACTTGGGGAACGTGGGTCGATCTCATTTCAGAGAGAAACTCGCGGTTAGGAAGATGGATGAAAGGGCATGGGAAGTATGTCCCAATGGAGGTAGAATTCAGTTTCAAAGCCCTCGAAATGGCATTCGTAATCCGAGTTTGGGGCATGTTCATCTTCTCAAACCGGGGAATCCTACCGAAACTTTAGGCTCTCCAACTCCACCGGTAAATAATAATCACGAGCAGCTTGTCAATGGAGTTAGAGATGAATTTTGTCTCAATCCCTATCAATCACAGAAGATAGCCCAAATGCAAATTGATTTCTCTGTAGCAACATCAAGGCCGCCTTCTGTGATGAACCGTGTAGGTGCAGATTCAGAACAATTAGATATAGAGCCTCAATGCAAAGAAGAGGGACCTGGCACCGACGAAAGACGACCACGCAAACGAGGCAGAAAGCCTGCAAATGGAAGGGAAGAACCACTAAATCACGTGGAGGCGGAGAGGCAGCGTCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTACCCAATATCTCCAAGATGGACAAAGCTTCACTGCTAGGAGATGCCATTGCTTACATTAATGAGCTTCAGTCCAAAGTGAAAGCCATGGAATATGAAAGGGAGCAATCCGGGGTCACCTCAAGTGAAGCAACCCCTTCGGATACGAACCCAGAAATTGAAAACAAAGATCAATTCCTCGATGTTGACATCAACGTCGAAGCAGGTAACGACGAAGTCATCGTTAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAAATGCACAGATCAATGTTGTTGATTCAAAACTCTCTGTTGAAGTAAACGATACAGTTTTGCACACGTTTACGATCAAATCCCCCGGATCGGAGCAGTTGACAAAGGAAGAGTTGATAGCCACAATTTCTTCAATTTCGCGGGATTCGACTCCGTTACATCCTCTATCAACAGTTGGGTAG 2127 45.89 MVRGGGGGEEEEEGRRSGRAKSRGEKTETHFPKFSISIFDSSSFWKTEKEESKRAVAFLGMFIAFQLSFKPLPSSHRLLFSAFRLLSTEMKIEDGLRGVGGKDEDKTVVAAVLGTRAFNYMMSCSVSNENLFMAVRNDDNLQNKLADLVETPNASNFCWNYAIFWQLSHSKSGQWVLGWGDGSFRDPRDGEGTEATQILSLELEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPGGEGGPGKCFASGKHVWHLDVLNSPAEYCVRSYLAKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVHLIRSLFSSQRSLDGVRTSAVMSRMAERKDENAPFPSLGIAERGGGVPKVFGQSLNLGNVGRSHFREKLAVRKMDERAWEVCPNGGRIQFQSPRNGIRNPSLGHVHLLKPGNPTETLGSPTPPVNNNHEQLVNGVRDEFCLNPYQSQKIAQMQIDFSVATSRPPSVMNRVGADSEQLDIEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQSKVKAMEYEREQSGVTSSEATPSDTNPEIENKDQFLDVDINVEAGNDEVIVKVSCPLESHPASRVIKAMKNAQINVVDSKLSVEVNDTVLHTFTIKSPGSEQLTKEELIATISSISRDSTPLHPLSTVG 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3928485 3931021 - Cp4.1LG08g00790.1 Cpe08g00597 473563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00597 708 MobiDBLite consensus disorder prediction 590 608 - -
Cpe08g00597 708 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 532 593 IPR036638 GO:0046983
Cpe08g00597 708 CDD bHLH_AtAIB_like 526 599 - -
Cpe08g00597 708 MobiDBLite consensus disorder prediction 589 608 - -
Cpe08g00597 708 MobiDBLite consensus disorder prediction 500 540 - -
Cpe08g00597 708 Gene3D - 523 593 IPR036638 GO:0046983
Cpe08g00597 708 SMART finulus 535 584 IPR011598 GO:0046983
Cpe08g00597 708 MobiDBLite consensus disorder prediction 1 27 - -
Cpe08g00597 708 Pfam Helix-loop-helix DNA-binding domain 533 579 IPR011598 GO:0046983
Cpe08g00597 708 PANTHER MYC 102 699 IPR045084 GO:0003700|GO:0006355
Cpe08g00597 708 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 529 578 IPR011598 GO:0046983
Cpe08g00597 708 MobiDBLite consensus disorder prediction 487 540 - -
Cpe08g00597 708 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 141 329 IPR025610 -
Cpe08g00597 708 PANTHER TRANSCRIPTION FACTOR MTB1 102 699 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01792 Cpe08g00597 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00049 Cpe-Chr5:258527 Cpe08g00597 Cpe-Chr8:3928485 5.13E-87 dispersed
Cpe08g00597 Cpe-Chr8:3928485 Cpe15g00064 Cpe-Chr15:445225 9.20E-100 dispersed
Cpe03g01792 Cpe-Chr3:13481416 Cpe08g00597 Cpe-Chr8:3928485 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49856 PF14215 bHLH-MYC_N 4.50E-52 CL0161 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00597 - - csv:101208845 1032.32