Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00602 ATGGCTAATCTCTATGTTAAGGCTATGCCTCCGGCGGATCTGAATAGGAACACGGAATGGTTTCTTTATCCTGGTGTTTGGACGACTTATATTCTCATTTTGTTCTTCACTTGGCTTCTCGTTCTCTCTGTATTTGGCTGCTCTCCTGGAATGGCCTGGACCATCGTCAATCTATCTCATTTTGCTGTCACCTACCACTGCTTCCATTGGAAGAAAGGGACACCATTTGCTGAAGACCAAGGGATCTACAACAGATTGACATGGTGGGAGCAGATTGACAACGGAAAGCAGCTTACCCGCAACCGAAAATTCTTGACTGTTGTTCCTGTGGTGCTGTACTTGATAGCCTCACACACAACTGACTATCAACATCCAATGTTATTTCTGAACACCCTAGCAGTAATCGTACTAGTTATTGCCAAGTTTCCTCATATGCACAAGGTACGCATCTTCGGGATCAACGCAGACAAGTGA 474 44.94 MANLYVKAMPPADLNRNTEWFLYPGVWTTYILILFFTWLLVLSVFGCSPGMAWTIVNLSHFAVTYHCFHWKKGTPFAEDQGIYNRLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQHPMLFLNTLAVIVLVIAKFPHMHKVRIFGINADK 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3966708 3970595 - Cp4.1LG08g00740.1 Cpe08g00602 473568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00602 157 PANTHER ORMDL PROTEINS 1 157 IPR007203 GO:0005789|GO:0016021
Cpe08g00602 157 PIRSF ORM1 3 157 IPR007203 GO:0005789|GO:0016021
Cpe08g00602 157 Pfam ORMDL family 15 149 IPR007203 GO:0005789|GO:0016021
Cpe08g00602 157 PANTHER ORMDL FAMILY PROTEIN 1 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00602 - - - csv:101207630 326.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00602 Cpe14g00509 CCT
Cpe08g00602 Cpe14g00509 ECH
Cpe03g01798 Cpe08g00602 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01798 Cpe-Chr3:13503320 Cpe08g00602 Cpe-Chr8:3966708 8.53E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g267 . . . . . . . . . Cmo16g00649 . . . . . Cpe14g00509 . . . . . . . . Cla07g00778 Cam07g0835 Cec07g0890 Cco07g0867 Clacu07g0813 Cmu07g0819 Cre07g1171 . . . . . . . Cme07g01634 . . . . . . Bma05g00545 . . . . . Cma16g00599 . . Cpe08g00602 . . . . . . . . . . . . . . . . Csa04g00590 . .
Vvi15g659 . . . . Bpe14g00936 . . . . . . Cma14g02120 Car06g00844 Car14g01921 Sed02g1775 Cpe08g00602 Cpe03g01798 Bhi01g00512 Tan10g0098 Cmetu06g1882 . Hepe05g2038 . Lcy11g2063 Cla05g00079 Cam05g0083 Cec05g0079 Cco05g0086 Clacu05g0074 Cmu05g0075 Cre05g0139 Cone14ag0437 Cone15ag0473 Cone11ag0505 . Lsi05g02140 . . Cme06g00081 Blo02g00317 Blo16g00481 . Bda13g00392 . . Bma02g01108 . . Cmo06g01028 Cmo14g02182 . . . . . . . . . . . . . . . . . . . . . . Chy06g00084 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004289 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00602 Cpe_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0