Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g00617 | ATGAGCGTGAAAACCCCGGCGACGAGGACTCGCGTTGGCAAGTACGAGCTCGGTAAAACCCTTGGCGAGGGCTCTTTTGCGAAGGTCAAGTTCGCCAAGAACATTGAGAATGGTGATTGTGTCGCCATCAAGATTCTTGATCGCGAACAAGTCCTTCGACACAAGATGGTCGAACAGATTAAAAGAGAGATATCGACTCTGAAAGTGATTAAGCATCCAAATGTTATGGCAAGCAAATCGAAAATCTACATTGTTCTTGAGTTTGTAGAGGGAGGCGAGCTCTTTGACAAAATAGCTACAAAGGGAAGGCTTAAGGAGGACGAGGCAAGGAAATATTTCCATCAGCTTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATTTGAAGCCTGAAAATCTTCTTCTCGACTCGCATGGTGTTCTTAAAGTATCAGATTTCGGATTGAGTGCATTTTCGCAGCAAGTTCATGGGGATGGTCTTCTTCACACTGCCTGTGGGACTCCGAACTATGTAGCGCCCGAGGTCTTCCATGATAAAGGTTATGATGGTCAATCATCTGATGTTTGGTCATGTGGGGTTATTCTCTTCGTTCTTATGGCTGGCTTCTTGCCTTTCAGCGAGTCAAATCTAACGCATTTGTATCGAAAAATTTCCAGGGCTGATTTCTGCTTTCCGTCGTGGTTCTCAAATGGTACTAGAAAACTAGTTCGTCGCATTCTCGATCCAAACCCTCTTACTCGAATAACGATAGCCGAAATTCAACAAGATGAATGGTTCAAGAAGGGCTACACACCCACCCACTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTCGATGCTGCTTTTAGCAGCTCGAGGGAACATCTTTTGACCGAAAAGAAAGAGAAACCGGTGTCGATGAATGCTTTTGAGCTTATCTCTAGGTCTCCGGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGAGAAACCCAGTTTACTTCACAGAGCCCTGCAAACGAGATCATGTCGAAGATCGAAGAAACTGCAAAACCTATGGGGTTCAATATTAAAAAACGGGACTACAAGATGAAGCTGCAAGGTGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCCACTGAGGTGTTCGAGGTGGCTCCTTCCTTGCATATGGTGGAGCTCCGAAAAACTGGTGAAATTGCATCGGAGAGGAACATGATATCAAAATCTCATATCTATGGCATGGTTTATGCACCACGGCAGGATGGCATGCACCGTCCCCAAAATTATGGGTCAACATCAGAGTATGAGTCTTGTTTGATCATCAATCGTGCAAACCTGTCAATGGTGGTTGGTGTAAGAAGCTGGAGGAAGAAGAAGATGGGCAAAGCCCCAGGAAAGTCTAGGTTGGCTTCCAGCTCCCATCTCGATCGGCATCCTACTTTCGAGGGAGTGGAGTCC | 1476 | 45.53 | MSVKTPATRTRVGKYELGKTLGEGSFAKVKFAKNIENGDCVAIKILDREQVLRHKMVEQIKREISTLKVIKHPNVMASKSKIYIVLEFVEGGELFDKIATKGRLKEDEARKYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHGVLKVSDFGLSAFSQQVHGDGLLHTACGTPNYVAPEVFHDKGYDGQSSDVWSCGVILFVLMAGFLPFSESNLTHLYRKISRADFCFPSWFSNGTRKLVRRILDPNPLTRITIAEIQQDEWFKKGYTPTHFEVEEDITLDDVDAAFSSSREHLLTEKKEKPVSMNAFELISRSPGFSLENLFEKQKAVAKRETQFTSQSPANEIMSKIEETAKPMGFNIKKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGEIASERNMISKSHIYGMVYAPRQDGMHRPQNYGSTSEYESCLIINRANLSMVVGVRSWRKKKMGKAPGKSRLASSSHLDRHPTFEGVES | 492 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4069686 | 4077117 | + | Cp4.1LG08g00680.1 | Cpe08g00617 | 473583 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g00617 | 492 | CDD | CIPK_C | 307 | 403 | - | - | |
Cpe08g00617 | 492 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 128 | 140 | IPR008271 | GO:0004672|GO:0006468 | |
Cpe08g00617 | 492 | PANTHER | - | 7 | 403 | - | - | |
Cpe08g00617 | 492 | Gene3D | Kinase associated domain 1, KA1 | 300 | 419 | - | - | |
Cpe08g00617 | 492 | Pfam | NAF domain | 303 | 363 | IPR004041 | GO:0007165 | |
Cpe08g00617 | 492 | ProSitePatterns | Protein kinases ATP-binding region signature. | 21 | 44 | IPR017441 | GO:0005524 | |
Cpe08g00617 | 492 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 | 7 | 403 | - | - | |
Cpe08g00617 | 492 | Gene3D | Phosphorylase Kinase; domain 1 | 4 | 88 | - | - | |
Cpe08g00617 | 492 | SMART | serkin_6 | 15 | 264 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe08g00617 | 492 | Pfam | Protein kinase domain | 15 | 264 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cpe08g00617 | 492 | MobiDBLite | consensus disorder prediction | 465 | 492 | - | - | |
Cpe08g00617 | 492 | Gene3D | Transferase(Phosphotransferase) domain 1 | 89 | 270 | - | - | |
Cpe08g00617 | 492 | MobiDBLite | consensus disorder prediction | 477 | 492 | - | - | |
Cpe08g00617 | 492 | SUPERFAMILY | Protein kinase-like (PK-like) | 12 | 292 | IPR011009 | - | |
Cpe08g00617 | 492 | ProSiteProfiles | NAF domain profile. | 301 | 325 | IPR018451 | GO:0007165 | |
Cpe08g00617 | 492 | ProSiteProfiles | Protein kinase domain profile. | 15 | 264 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe03g01812 | Cpe08g00617 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01300 | Cpe-Chr3:10556643 | Cpe08g00617 | Cpe-Chr8:4069686 | 3.98E-89 | dispersed | |
Cpe08g00617 | Cpe-Chr8:4069686 | Cpe20g00539 | Cpe-Chr20:3136138 | 0 | dispersed | |
Cpe03g01812 | Cpe-Chr3:13563708 | Cpe08g00617 | Cpe-Chr8:4069686 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
62553 | PF00069 | Pkinase | 2.10E-65 | CL0016 | Cpe | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g00617 | - | - | csv:101203531 | 726.472 |