Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00617 ATGAGCGTGAAAACCCCGGCGACGAGGACTCGCGTTGGCAAGTACGAGCTCGGTAAAACCCTTGGCGAGGGCTCTTTTGCGAAGGTCAAGTTCGCCAAGAACATTGAGAATGGTGATTGTGTCGCCATCAAGATTCTTGATCGCGAACAAGTCCTTCGACACAAGATGGTCGAACAGATTAAAAGAGAGATATCGACTCTGAAAGTGATTAAGCATCCAAATGTTATGGCAAGCAAATCGAAAATCTACATTGTTCTTGAGTTTGTAGAGGGAGGCGAGCTCTTTGACAAAATAGCTACAAAGGGAAGGCTTAAGGAGGACGAGGCAAGGAAATATTTCCATCAGCTTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATTTGAAGCCTGAAAATCTTCTTCTCGACTCGCATGGTGTTCTTAAAGTATCAGATTTCGGATTGAGTGCATTTTCGCAGCAAGTTCATGGGGATGGTCTTCTTCACACTGCCTGTGGGACTCCGAACTATGTAGCGCCCGAGGTCTTCCATGATAAAGGTTATGATGGTCAATCATCTGATGTTTGGTCATGTGGGGTTATTCTCTTCGTTCTTATGGCTGGCTTCTTGCCTTTCAGCGAGTCAAATCTAACGCATTTGTATCGAAAAATTTCCAGGGCTGATTTCTGCTTTCCGTCGTGGTTCTCAAATGGTACTAGAAAACTAGTTCGTCGCATTCTCGATCCAAACCCTCTTACTCGAATAACGATAGCCGAAATTCAACAAGATGAATGGTTCAAGAAGGGCTACACACCCACCCACTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTCGATGCTGCTTTTAGCAGCTCGAGGGAACATCTTTTGACCGAAAAGAAAGAGAAACCGGTGTCGATGAATGCTTTTGAGCTTATCTCTAGGTCTCCGGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGAGAAACCCAGTTTACTTCACAGAGCCCTGCAAACGAGATCATGTCGAAGATCGAAGAAACTGCAAAACCTATGGGGTTCAATATTAAAAAACGGGACTACAAGATGAAGCTGCAAGGTGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCCACTGAGGTGTTCGAGGTGGCTCCTTCCTTGCATATGGTGGAGCTCCGAAAAACTGGTGAAATTGCATCGGAGAGGAACATGATATCAAAATCTCATATCTATGGCATGGTTTATGCACCACGGCAGGATGGCATGCACCGTCCCCAAAATTATGGGTCAACATCAGAGTATGAGTCTTGTTTGATCATCAATCGTGCAAACCTGTCAATGGTGGTTGGTGTAAGAAGCTGGAGGAAGAAGAAGATGGGCAAAGCCCCAGGAAAGTCTAGGTTGGCTTCCAGCTCCCATCTCGATCGGCATCCTACTTTCGAGGGAGTGGAGTCC 1476 45.53 MSVKTPATRTRVGKYELGKTLGEGSFAKVKFAKNIENGDCVAIKILDREQVLRHKMVEQIKREISTLKVIKHPNVMASKSKIYIVLEFVEGGELFDKIATKGRLKEDEARKYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHGVLKVSDFGLSAFSQQVHGDGLLHTACGTPNYVAPEVFHDKGYDGQSSDVWSCGVILFVLMAGFLPFSESNLTHLYRKISRADFCFPSWFSNGTRKLVRRILDPNPLTRITIAEIQQDEWFKKGYTPTHFEVEEDITLDDVDAAFSSSREHLLTEKKEKPVSMNAFELISRSPGFSLENLFEKQKAVAKRETQFTSQSPANEIMSKIEETAKPMGFNIKKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGEIASERNMISKSHIYGMVYAPRQDGMHRPQNYGSTSEYESCLIINRANLSMVVGVRSWRKKKMGKAPGKSRLASSSHLDRHPTFEGVES 492
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 4069686 4077117 + Cp4.1LG08g00680.1 Cpe08g00617 473583
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00617 492 CDD CIPK_C 307 403 - -
Cpe08g00617 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cpe08g00617 492 PANTHER - 7 403 - -
Cpe08g00617 492 Gene3D Kinase associated domain 1, KA1 300 419 - -
Cpe08g00617 492 Pfam NAF domain 303 363 IPR004041 GO:0007165
Cpe08g00617 492 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cpe08g00617 492 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 403 - -
Cpe08g00617 492 Gene3D Phosphorylase Kinase; domain 1 4 88 - -
Cpe08g00617 492 SMART serkin_6 15 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00617 492 Pfam Protein kinase domain 15 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe08g00617 492 MobiDBLite consensus disorder prediction 465 492 - -
Cpe08g00617 492 Gene3D Transferase(Phosphotransferase) domain 1 89 270 - -
Cpe08g00617 492 MobiDBLite consensus disorder prediction 477 492 - -
Cpe08g00617 492 SUPERFAMILY Protein kinase-like (PK-like) 12 292 IPR011009 -
Cpe08g00617 492 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Cpe08g00617 492 ProSiteProfiles Protein kinase domain profile. 15 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe03g01812 Cpe08g00617 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01300 Cpe-Chr3:10556643 Cpe08g00617 Cpe-Chr8:4069686 3.98E-89 dispersed
Cpe08g00617 Cpe-Chr8:4069686 Cpe20g00539 Cpe-Chr20:3136138 0 dispersed
Cpe03g01812 Cpe-Chr3:13563708 Cpe08g00617 Cpe-Chr8:4069686 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62553 PF00069 Pkinase 2.10E-65 CL0016 Cpe PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00617 - - csv:101203531 726.472