Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe08g00624 | ATGGGCGGGAGCGACGACGAGTTATGTCTCAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCGAGTTTCATCCACAGGCCTTCCAACTCCATGATTAATCACCTCCGTAGGAGCTCTTGGAAAGATGCGTTTCAAGTTTCTGATCGAAACGTCGATTCGAGGTCGTTTCTTAGGGGAATCGATGTGAATAGGCTGAGGACGGCGGTGGATGGAGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGGTTTCTAGTATCAGTGGAAAGAGGAGCGAGAGAGAAGCCGTTGGAGATGAGGCGGAGGCCGAGAGAACCTCGTGCTCGCGAGGGAGCGACGATGAAGACGGCGGCGATGGTGACGGCGACGCCTCGAGAAAGAAGCTCAGGTTATCGAAGGAACAGTCGTTGGTTCTTGAGGAGACGTTCAAAGAGCACAACACGCTCAATCCAGTAAGTGGCAATCCGGTCATTTCATACGATTCTTCTCTTCACGTAGCGTTGATGATTAGTGGCAATTCGAAGCAAAAGCTGGCTCTTGCAAAACGGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAGTTGAAGCAAACAGAAGTGGATTGCGAGTACTTGAGGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGGTCCCTCAAGCTTTCTCCGCAGCTCTATATGCACATGAACCCTCCTACCACTCTCACTATGTGCCCGCAGTGTGAGCGTGTGGCGGTTTCCTCGTTCTCGTCGACATCAGCTGCTTCGACTCGCCATCCAGTAGCAGCTGGTATGCAGCAGCGACCCTCGATGCCCATTGCCCCGCAGGCGGTGTTGCCGATCCAACGTTGA | 912 | 52.19 | MGGSDDELCLSLSLGFGVTTQPSFIHRPSNSMINHLRRSSWKDAFQVSDRNVDSRSFLRGIDVNRLRTAVDGEEENGVSSPNSTVSSISGKRSEREAVGDEAEAERTSCSRGSDDEDGGDGDGDASRKKLRLSKEQSLVLEETFKEHNTLNPVSGNPVISYDSSLHVALMISGNSKQKLALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVQELRSLKLSPQLYMHMNPPTTLTMCPQCERVAVSSFSSTSAASTRHPVAAGMQQRPSMPIAPQAVLPIQR | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4126877 | 4129010 | - | Cp4.1LG08g00450.1 | Cpe08g00624 | 473590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe08g00624 | 303 | CDD | homeodomain | 127 | 207 | IPR001356 | GO:0003677 | |
Cpe08g00624 | 303 | ProSiteProfiles | 'Homeobox' domain profile. | 123 | 206 | IPR001356 | GO:0003677 | |
Cpe08g00624 | 303 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 | 174 | 298 | - | - | |
Cpe08g00624 | 303 | Pfam | Homeodomain | 175 | 204 | IPR001356 | GO:0003677 | |
Cpe08g00624 | 303 | PANTHER | - | 3 | 152 | - | - | |
Cpe08g00624 | 303 | PANTHER | - | 174 | 298 | - | - | |
Cpe08g00624 | 303 | MobiDBLite | consensus disorder prediction | 75 | 91 | - | - | |
Cpe08g00624 | 303 | Pfam | HD-ZIP protein N terminus | 1 | 96 | IPR006712 | GO:0005634 | |
Cpe08g00624 | 303 | MobiDBLite | consensus disorder prediction | 71 | 131 | - | - | |
Cpe08g00624 | 303 | Gene3D | - | 133 | 202 | - | - | |
Cpe08g00624 | 303 | ProSitePatterns | 'Homeobox' domain signature. | 181 | 204 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe08g00624 | 303 | Pfam | Homeobox associated leucine zipper | 206 | 239 | IPR003106 | GO:0006355|GO:0043565 | |
Cpe08g00624 | 303 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 | 3 | 152 | - | - | |
Cpe08g00624 | 303 | SMART | halz | 206 | 249 | IPR003106 | GO:0006355|GO:0043565 | |
Cpe08g00624 | 303 | Coils | Coil | 212 | 242 | - | - | |
Cpe08g00624 | 303 | SMART | HOX_1 | 125 | 210 | IPR001356 | GO:0003677 | |
Cpe08g00624 | 303 | MobiDBLite | consensus disorder prediction | 93 | 131 | - | - | |
Cpe08g00624 | 303 | SUPERFAMILY | Homeodomain-like | 175 | 215 | IPR009057 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe08g00624 | Cpe12g00050 | CCT | |
Cpe03g01822 | Cpe08g00624 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe08g00624 | Cpe-Chr8:4126877 | Cpe14g00930 | Cpe-Chr14:7818059 | 1.31E-96 | dispersed | |
Cpe03g01822 | Cpe-Chr3:13608181 | Cpe08g00624 | Cpe-Chr8:4126877 | 2.79E-142 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49857 | PF04618 | HD-ZIP_N | 5.20E-27 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe08g00624 | K09338 | - | csv:101222132 | 401.749 |