Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00624 ATGGGCGGGAGCGACGACGAGTTATGTCTCAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCGAGTTTCATCCACAGGCCTTCCAACTCCATGATTAATCACCTCCGTAGGAGCTCTTGGAAAGATGCGTTTCAAGTTTCTGATCGAAACGTCGATTCGAGGTCGTTTCTTAGGGGAATCGATGTGAATAGGCTGAGGACGGCGGTGGATGGAGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGGTTTCTAGTATCAGTGGAAAGAGGAGCGAGAGAGAAGCCGTTGGAGATGAGGCGGAGGCCGAGAGAACCTCGTGCTCGCGAGGGAGCGACGATGAAGACGGCGGCGATGGTGACGGCGACGCCTCGAGAAAGAAGCTCAGGTTATCGAAGGAACAGTCGTTGGTTCTTGAGGAGACGTTCAAAGAGCACAACACGCTCAATCCAGTAAGTGGCAATCCGGTCATTTCATACGATTCTTCTCTTCACGTAGCGTTGATGATTAGTGGCAATTCGAAGCAAAAGCTGGCTCTTGCAAAACGGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAGTTGAAGCAAACAGAAGTGGATTGCGAGTACTTGAGGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGGTCCCTCAAGCTTTCTCCGCAGCTCTATATGCACATGAACCCTCCTACCACTCTCACTATGTGCCCGCAGTGTGAGCGTGTGGCGGTTTCCTCGTTCTCGTCGACATCAGCTGCTTCGACTCGCCATCCAGTAGCAGCTGGTATGCAGCAGCGACCCTCGATGCCCATTGCCCCGCAGGCGGTGTTGCCGATCCAACGTTGA 912 52.19 MGGSDDELCLSLSLGFGVTTQPSFIHRPSNSMINHLRRSSWKDAFQVSDRNVDSRSFLRGIDVNRLRTAVDGEEENGVSSPNSTVSSISGKRSEREAVGDEAEAERTSCSRGSDDEDGGDGDGDASRKKLRLSKEQSLVLEETFKEHNTLNPVSGNPVISYDSSLHVALMISGNSKQKLALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVQELRSLKLSPQLYMHMNPPTTLTMCPQCERVAVSSFSSTSAASTRHPVAAGMQQRPSMPIAPQAVLPIQR 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4126877 4129010 - Cp4.1LG08g00450.1 Cpe08g00624 473590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00624 303 CDD homeodomain 127 207 IPR001356 GO:0003677
Cpe08g00624 303 ProSiteProfiles 'Homeobox' domain profile. 123 206 IPR001356 GO:0003677
Cpe08g00624 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 174 298 - -
Cpe08g00624 303 Pfam Homeodomain 175 204 IPR001356 GO:0003677
Cpe08g00624 303 PANTHER - 3 152 - -
Cpe08g00624 303 PANTHER - 174 298 - -
Cpe08g00624 303 MobiDBLite consensus disorder prediction 75 91 - -
Cpe08g00624 303 Pfam HD-ZIP protein N terminus 1 96 IPR006712 GO:0005634
Cpe08g00624 303 MobiDBLite consensus disorder prediction 71 131 - -
Cpe08g00624 303 Gene3D - 133 202 - -
Cpe08g00624 303 ProSitePatterns 'Homeobox' domain signature. 181 204 IPR017970 GO:0000981|GO:0006355
Cpe08g00624 303 Pfam Homeobox associated leucine zipper 206 239 IPR003106 GO:0006355|GO:0043565
Cpe08g00624 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 3 152 - -
Cpe08g00624 303 SMART halz 206 249 IPR003106 GO:0006355|GO:0043565
Cpe08g00624 303 Coils Coil 212 242 - -
Cpe08g00624 303 SMART HOX_1 125 210 IPR001356 GO:0003677
Cpe08g00624 303 MobiDBLite consensus disorder prediction 93 131 - -
Cpe08g00624 303 SUPERFAMILY Homeodomain-like 175 215 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00624 Cpe12g00050 CCT
Cpe03g01822 Cpe08g00624 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00624 Cpe-Chr8:4126877 Cpe14g00930 Cpe-Chr14:7818059 1.31E-96 dispersed
Cpe03g01822 Cpe-Chr3:13608181 Cpe08g00624 Cpe-Chr8:4126877 2.79E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49857 PF04618 HD-ZIP_N 5.20E-27 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00624 K09338 - csv:101222132 401.749