Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00642 ATGATGAATTTCAAGCATTCCCTTTTCTTTGCTACCCTTCTTTCTCTTTCACTTACCCCTTGTTTTTGCTTCAATCCCAAATCCCTTAATCTCTCCAACTATGACTCCTACGATTCTAATTCCGGCTGGTCTCCGGCCGTCGCCACCTGGTACGGCAGCCCAGTCGGCGCCGGGAGCGACGGAGGTGCGTGTGGGTATGGAAGCGCGGTGGGGGAACCACCATTCTCGTCGTTGATTGCCGCGGGAGGCCCTTCCTTGTTCAAATCCGGCAAGGGCTGTGGTGCTTGTTATCAAGTGAAGTGCTTGGGAAAGGGCGCCTGCTCCCGGAATCCGGTGACGGTGGTTATAACTGACAGTTGTCCTGGCGGTTCCTGTGCTTCCGACGCTGTCCATTTCGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCTTCTCGTCGTGCCGATGAGCTCCGCAATCTTGGCGTACTGCAGATTCAATATAAAAGGTATGCATTAACTCTGCATTCCCTTTTCTTTGCTACCCTTCTTTCTCTTTCACTTACCCCTTGTTTTTGCTTCAATCCCAAATCCCTTAATCTCTCCAACTATGACTCCTACGATTCTAATTCCGGCTGGTCTCCGGCCGTCGCCACCTGGTACGGCAGCCCAGTCGGCGCCGGGAGCGACGGAGGTGCGTGTGGGTATGGAAGCGCGGTGGGGGAACCACCATTCTCGTCGTTGATTGCCGCGGGAGGCCCTTCCTTGTTCAAATCCGGCAAGGGCTGTGGTGCTTGTTATCAAGTGAAGTGCTTGGGAAAGGGCGCCTGCTCCCGGAATCCGGTGACGGTGGTTATAACTGACAGTTGTCCTGGCGGTTCCTGTGCTTCCGACGCTGTCCATTTCGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCTTCTCGTCGTGCCGATGAGCTCCGCAATCTTGGCGTACTGCAGATTCAATATAAAAGGTATGCATTAACTCTGTTCGTGGTGGACGCAGGGTCGAACCCAAACTATTTTGCAGCTTTGATCGAATACGAAAATGGAGATGGAGTTCTTGGTTCAGTGGAGTTGAAACAAGCGCAGGGGTCGGGTTCATGGATTCCCATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTGGACTATGGCTCCGCCCTTAAGGCTCCCTTCTCTTTCAGGCTCACTGCCCAGGAATCCAGGAAAGCCGTGGTGGCTAACAACGTGATTCCGGCAGGGTGGGAGCCGGGGAAGACTTATAGATCAGTGGGCGCCTGCTCCCGGAATCCGGTGACGGTGGTTATAACTGACAGTTGTCCTGGCGGTTCCTGTGCTTCCGACGCTGTCCATTTCGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCTTCTCGTCGTGCCGATGAGCTCCGCAATCTTGGCGTACTGCAGATTCAATATAAAAGGTATGCATTAACTCTGTTCGTGGTGGACGCAGGGTCGAACCCAAACTATTTTGCAGCTTTGATCGAATACGAAAATGGAGATGGAGTTCTTGGTTCAGTGGAGTTGAAACAAGCGCAGGGGTCGGGTTCATGGATTCCCATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTGGACTATGGCTCCGCCCTTAAGGCTCCCTTCTCTTTCAGGCTCACTGCCCAGGAATCCAGGAAAGCCGTGGTGGCTAACAACGTGATTCCGGCAGGGTGGGAGCCGGGGAAGACTTATAGATCAGTGGTCAACTTCAAGGCTTAG 1767 53.76 MMNFKHSLFFATLLSLSLTPCFCFNPKSLNLSNYDSYDSNSGWSPAVATWYGSPVGAGSDGGACGYGSAVGEPPFSSLIAAGGPSLFKSGKGCGACYQVKCLGKGACSRNPVTVVITDSCPGGSCASDAVHFDLSGTAFGAMAASRRADELRNLGVLQIQYKRYALTLHSLFFATLLSLSLTPCFCFNPKSLNLSNYDSYDSNSGWSPAVATWYGSPVGAGSDGGACGYGSAVGEPPFSSLIAAGGPSLFKSGKGCGACYQVKCLGKGACSRNPVTVVITDSCPGGSCASDAVHFDLSGTAFGAMAASRRADELRNLGVLQIQYKRYALTLFVVDAGSNPNYFAALIEYENGDGVLGSVELKQAQGSGSWIPMKQSWGAVWKLDYGSALKAPFSFRLTAQESRKAVVANNVIPAGWEPGKTYRSVGACSRNPVTVVITDSCPGGSCASDAVHFDLSGTAFGAMAASRRADELRNLGVLQIQYKRYALTLFVVDAGSNPNYFAALIEYENGDGVLGSVELKQAQGSGSWIPMKQSWGAVWKLDYGSALKAPFSFRLTAQESRKAVVANNVIPAGWEPGKTYRSVVNFKA 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4293389 4299056 + Cp4.1LG08g00330.1 Cpe08g00642 473608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00642 588 PANTHER EXPANSIN-B3 173 425 - -
Cpe08g00642 588 PANTHER EXPANSIN-B3 427 587 - -
Cpe08g00642 588 PANTHER EXPANSIN-B3 10 163 - -
Cpe08g00642 588 Pfam Expansin C-terminal domain 332 413 IPR007117 -
Cpe08g00642 588 Pfam Expansin C-terminal domain 490 571 IPR007117 -
Cpe08g00642 588 PANTHER EXPANSIN-B2-RELATED 173 425 - -
Cpe08g00642 588 PANTHER EXPANSIN-B2-RELATED 427 587 - -
Cpe08g00642 588 PANTHER EXPANSIN-B2-RELATED 10 163 - -
Cpe08g00642 588 Pfam Lytic transglycolase 80 161 IPR009009 -
Cpe08g00642 588 Pfam Lytic transglycolase 243 324 IPR009009 -
Cpe08g00642 588 Pfam Lytic transglycolase 427 482 IPR009009 -
Cpe08g00642 588 SUPERFAMILY Barwin-like endoglucanases 426 484 IPR036908 -
Cpe08g00642 588 SUPERFAMILY Barwin-like endoglucanases 39 164 IPR036908 -
Cpe08g00642 588 Gene3D - 487 587 IPR036749 -
Cpe08g00642 588 Gene3D - 423 486 IPR036908 -
Cpe08g00642 588 Gene3D - 27 165 IPR036908 -
Cpe08g00642 588 Gene3D - 190 328 IPR036908 -
Cpe08g00642 588 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 163 IPR007112 -
Cpe08g00642 588 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 499 582 IPR007117 -
Cpe08g00642 588 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 224 326 IPR007112 -
Cpe08g00642 588 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 428 484 IPR007112 -
Cpe08g00642 588 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 341 424 IPR007117 -
Cpe08g00642 588 Gene3D - 330 422 IPR036749 -
Cpe08g00642 588 PRINTS Expansin/Lol pI family signature 370 384 IPR007118 GO:0005576
Cpe08g00642 588 PRINTS Expansin/Lol pI family signature 246 264 IPR007118 GO:0005576
Cpe08g00642 588 PRINTS Expansin/Lol pI family signature 205 220 IPR007118 GO:0005576
Cpe08g00642 588 PRINTS Expansin/Lol pI family signature 223 241 IPR007118 GO:0005576
Cpe08g00642 588 PRINTS Expansin/Lol pI family signature 410 424 IPR007118 GO:0005576
Cpe08g00642 588 PRINTS Major pollen allergen Lol pI signature 264 274 IPR005795 GO:0005576|GO:0019953
Cpe08g00642 588 PRINTS Major pollen allergen Lol pI signature 379 396 IPR005795 GO:0005576|GO:0019953
Cpe08g00642 588 PRINTS Major pollen allergen Lol pI signature 348 363 IPR005795 GO:0005576|GO:0019953
Cpe08g00642 588 PRINTS Major pollen allergen Lol pI signature 244 255 IPR005795 GO:0005576|GO:0019953
Cpe08g00642 588 PRINTS Major pollen allergen Lol pI signature 332 347 IPR005795 GO:0005576|GO:0019953
Cpe08g00642 588 SUPERFAMILY Barwin-like endoglucanases 202 326 IPR036908 -
Cpe08g00642 588 SMART dpbb_1 79 161 IPR007112 -
Cpe08g00642 588 SMART dpbb_1 242 324 IPR007112 -
Cpe08g00642 588 SUPERFAMILY PHL pollen allergen 490 582 IPR036749 -
Cpe08g00642 588 SUPERFAMILY PHL pollen allergen 332 424 IPR036749 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01834 Cpe08g00642 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00772 Cpe-Chr4:7401232 Cpe08g00642 Cpe-Chr8:4293389 1.45E-37 dispersed
Cpe05g01493 Cpe-Chr5:10298659 Cpe08g00642 Cpe-Chr8:4293389 1.16E-29 dispersed
Cpe08g00642 Cpe-Chr8:4293389 Cpe16g00785 Cpe-Chr16:7738643 9.97E-20 dispersed
Cpe03g01834 Cpe-Chr3:13675469 Cpe08g00642 Cpe-Chr8:4293389 4.97E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00642 - - cpep:111800083 785.408