Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00649 ATGGGTAAGAAGGGAGGCTCCTCCTGGTTGACTGCTGTCAAAAGGGCTTTTAGATCTCCTTCCAAGGATGAAGACGACAAGAAAAGAGAGAAGCGGAGATGGATTTTCAGGCGATCCACCAATCTACACGACACGGATACTCACCAAACGACGTCGGCTACGGAACATGCATCTTCCGAGGCAGCGCTTGCGGTTGCGGTGGCTACTGCTGAAGCTGCTGTCGCTACTGCTCAAGCGGCTGTGGAGATTGCTCGCCTACCTACTCGGCCTTCCAATCACGCTAGATATCACTATGCTGCGATTGTTATTCAGACCGCTTTTAGGGGATACTTGGCAAGGAGGGCTCTGCGTGCGCTGAAGGGGTTGGTGAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTGAGAAAACAGGCGAAGATGACCCTTCGATGCATGCAAGCGCTGGTTCGAGTGCAAGCCCGTGTGCTCGATCAGCGGATGAGACTCTCCCATGACGGCAGTAGAAAATCCACCTTCAGCGACACAAATAGCGTCCTTGGATCGCGTTATCTCCAAAATTTCTCCGATAGAAAATCCGTTTCTCAGTCAAGGGAGGGAAGTAGCACTGTCACAGACGATTGGGATGAACGGCCCCACTCTGTTGAAGAAGTGAAAGCTATGCTTCAACATAGAAAAGAGATCGCCATGAAGCGTGATCGAAATCTCTCCCACGCCTTCTCCCAACAGATATGGCGGAGAGGTCGAAGTCCATCCATGGGAAGTGGAGATGATTTCGAAGAAAGACCCAAATGGCTGGATCAATGGAATTCAAGGAAGCCATTGGAAAACAGGGGAAGAGCTTCAACGGATCAAAGAGACCCCATAAAAACAGTGGAAATCGACACCTTCCAGCCCTACTCTCACCGGAGAACGGTTCAGAATCAACAAAGAACAAATCCACATTCCGGCAGCTCGCCACTCCACCGGTCGCAACAAAACATACCCTGTTTCCACCACTCACCAGCCACACCATCCCCATCTAAAACAAGGCCTCTGCTAGTCCGGTCCGCAAGCCCACGTATCATCAGAGACGACAAAAGCGAAAATACATCCCAAACACCAAGCTTAAGGTCAAACTATTACTACAGTGGCAATTTACTTCAACAAAGTAGAACAGCAGCAAGTAGCAGCTATAGCCAAGGCAATTGTTTGCCGAATTACATGGCAGCCACAGAGTCCGCAAAGGCACGATTACGGTCACATAGCGCGCCGAGACAACGGCCATCAACGCCGGAGAGGGAGAGAGGAGTTGGGTCAGCTAAAAAACGGCTATCATTCCCAGTTCCTGATCCAAATGGGTATGGCGTTTACGAGCGAAATTTGAAAAGTCCAAGCTTCAAGAGCGTAAGCGGGACATACTTTGGGATGGAGCAGCAATCCAACTATTCATCTTGCTGCACCGACAGCCTCGGCGGCGAGATTTCCCCTTCTTCAACGACGGATCTAAGAAGATGGCTAAGGTGA 1503 50.57 MGKKGGSSWLTAVKRAFRSPSKDEDDKKREKRRWIFRRSTNLHDTDTHQTTSATEHASSEAALAVAVATAEAAVATAQAAVEIARLPTRPSNHARYHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHDGSRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSTVTDDWDERPHSVEEVKAMLQHRKEIAMKRDRNLSHAFSQQIWRRGRSPSMGSGDDFEERPKWLDQWNSRKPLENRGRASTDQRDPIKTVEIDTFQPYSHRRTVQNQQRTNPHSGSSPLHRSQQNIPCFHHSPATPSPSKTRPLLVRSASPRIIRDDKSENTSQTPSLRSNYYYSGNLLQQSRTAASSSYSQGNCLPNYMAATESAKARLRSHSAPRQRPSTPERERGVGSAKKRLSFPVPDPNGYGVYERNLKSPSFKSVSGTYFGMEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4388801 4392109 + Cp4.1LG08g00270.1 Cpe08g00649 473615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00649 500 MobiDBLite consensus disorder prediction 1 30 - -
Cpe08g00649 500 MobiDBLite consensus disorder prediction 37 56 - -
Cpe08g00649 500 MobiDBLite consensus disorder prediction 297 345 - -
Cpe08g00649 500 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 500 - -
Cpe08g00649 500 MobiDBLite consensus disorder prediction 419 433 - -
Cpe08g00649 500 Pfam Protein of unknown function (DUF4005) 351 450 IPR025064 -
Cpe08g00649 500 PANTHER IQ-DOMAIN 5-RELATED 1 500 - -
Cpe08g00649 500 MobiDBLite consensus disorder prediction 190 211 - -
Cpe08g00649 500 MobiDBLite consensus disorder prediction 480 500 - -
Cpe08g00649 500 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Cpe08g00649 500 Pfam IQ calmodulin-binding motif 123 139 IPR000048 GO:0005515
Cpe08g00649 500 Pfam IQ calmodulin-binding motif 99 117 IPR000048 GO:0005515
Cpe08g00649 500 MobiDBLite consensus disorder prediction 407 447 - -
Cpe08g00649 500 SMART iq_5 95 117 IPR000048 GO:0005515
Cpe08g00649 500 SMART iq_5 118 139 IPR000048 GO:0005515
Cpe08g00649 500 MobiDBLite consensus disorder prediction 244 371 - -
Cpe08g00649 500 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Cpe08g00649 500 Gene3D - 93 148 - -
Cpe08g00649 500 MobiDBLite consensus disorder prediction 252 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00649 - - - zju:107423775 667.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00598 Cpe-Chr5:3631166 Cpe08g00649 Cpe-Chr8:4388801 2.27E-24 dispersed
Cpe08g00649 Cpe-Chr8:4388801 Cpe12g00436 Cpe-Chr12:3406540 1.47E-178 dispersed
Cpe08g00649 Cpe-Chr8:4388801 Cpe01g02257 Cpe-Chr1:19147453 2.65E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01224 CCT,CST,ECH 60 212 IQD Protein Family AT3G09710 53.9 7.4e-41 165.6
Cpe01g02257 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.9 2.2e-100 363.2
Cpe13g00819 CCT,CST,ECH 1 469 IQD Protein Family AT3G52290 52.0 6.7e-97 351.7
Cpe18g00224 . 1 349 IQD Protein Family AT3G22190 59.8 3.0e-89 326.2
Cpe02g00266 . 1 434 IQD Protein Family AT2G26180 59.5 3.4e-114 409.1
Cpe06g00243 . 1 438 IQD Protein Family AT2G26180 58.2 1.2e-111 400.6
Cpe19g01052 . 49 327 IQD Protein Family AT2G33990 51.6 4.1e-65 245.4
Cpe14g00349 . 98 281 IQD Protein Family AT2G33990 53.5 2.7e-48 189.5
Cpe19g01052 . 49 301 IQD Protein Family AT3G15050 50.2 1.1e-59 227.3
Cpe14g00349 . 101 274 IQD Protein Family AT3G15050 61.6 9.4e-54 207.6
Cpe08g00649 . 1 500 IQD Protein Family AT4G00820 56.3 1.3e-126 450.7
Cpe08g00649 . 1 500 IQD Protein Family AT1G01110 51.7 6.7e-123 438.3
Cpe04g01092 CST 1 382 IQD Protein Family AT3G16490 51.6 1.3e-67 254.2
Cpe17g00525 CCT,CST,ECH 201 454 IQD Protein Family AT3G16490 50.2 1.9e-50 197.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe08g00649 Cpe_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0